Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63300 388 / 8e-131 FKD1 FORKED 1 (.1.2) AT3G22810 338 / 1e-111 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G14740 331 / 8e-109 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT5G43870 296 / 1e-95 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G32785 121 / 6e-33 unknown protein AT5G47440 85 / 1e-17 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G17350 85 / 1e-17 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 77 / 7e-15 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049200 [exp] 592 / 0 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.010G082400 [exp] 370 / 2e-124 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.008G157000 [exp] 359 / 6e-120 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.018G042000 [exp] 110 / 3e-26 AT4G32785 159 / 1e-47 unknown protein Potri.003G077900 [exp] 105 / 1e-24 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.001G156700 [exp] 91 / 1e-19 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006614 [exp] 304 / 2e-98 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10014703 [exp] 243 / 9e-78 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10039370 [exp] 199 / 6e-60 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10041187 [exp] 169 / 2e-47 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10004079 [exp] 141 / 6e-38 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10021903 [exp] 132 / 4e-35 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10009509 [exp] 117 / 4e-30 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014704 [exp] 94 / 4e-22 AT3G63300 143 / 9e-41 FORKED 1 (.1.2) Lus10004734 [exp] 90 / 4e-19 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [poplar] [flax] Auxin_canalis Auxin canalisation CL0266 [poplar] [flax] PH PF08458 [poplar] [flax] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Potri.005G213800.2 pacid=42803858 polypeptide=Potri.005G213800.2.p locus=Potri.005G213800 ID=Potri.005G213800.2.v4.1 annot-version=v4.1 ATGGAAGAGATCCCTCTTATCAACCTTCGCAGGCCAGATTACAGCCCACTCTGCAGCAATATTCCGCTGCCAGAGAGCCCAAAACTTCCAATGGAGTTCT TGTCAAGGTCATGGAGTGTCTCGGCTCTTGAAGTCTCAAAATCTCTCTCCTGCATGGCCTCTAACAAGTCTGCAAGTAGCTCTAGTTGTACTACTGCTTC TTCTATACCTGAAGATGTCACTGGTGAGATGACCGAGGAGATTGTGCAAACCAATCCGTCTGCTAATTATCAGTTTTCTTTTGCTTCTTCCGCCACTTCC CAGCTTTTACTCGAGCGTATCATGTCACAATCAGAAGTGTCACCGTTGGCTTCAGGGAGGCTCTCTCACAGCAGTGGACCTTTAAACTTAACAGAATCAG ACAGCCCCCCAATTTCACCCTCTGATGATTTTGAAGACATTGTTAAGTATTTTCGTACTCACAACTCCTTAAACCCCCTATTCAATGGCGGCCGTGCCAG TGCTGGGCCTGGCAGCGGTGCTCCTCCGAGTGGATCCAAGACAGTTGGGAGGTGGTTGAAGGACAGAAAAGAGAAAAAGAAAGAAGAAACTAGAGCCCAG AATGCACAGCTCCATGCAGCTGTTTCAGTTGCTGCGGTGGCTTCTGCCATAGCAGCCATTGCAGCAGCCACAGCTTCTGCTTCAGCAGCACGAAGGAATG AGCAATTGGCCAGGACTGACATGGCTGTGGCATCTGCGGCTACATTGGTGGCTGCTCAGTGTGTGGAGGCTGCTGAGGCTATGGGCGCTGAGCGTGACCA TCTTGCTTCAGTAGTGAGCTCTGCTGTGAATGTTCATTCACATGATGATATCACCACTCTTACAGCAGCTGCAGCTACTGCTCTACGTGGGGCAGCAACC TTGAAGGCAAGAGCATTAAAGGATGTTTTGAATGTTGCAGCGGCAATACCTATAGAGAGATGCACTGGAATCTGTGGTGCAGGAAATAATGGACATCATA ACCGAAGCTACAGCGGTGAGCTTGTCAATGGAGAGAATTTTTTGGGTGCTTGTAGCGTAGAATTCCTTGCCAGGGGCAGTGAGCTTCTCAAACGCACCCG CCAAGGTGATCTGCACTGGAAAATTGTCTCTGTATACTTACACAGGACAGGCCAGGTGATGCTAAAGATGAAGAGCAGACATGTTGCAGGGACTATCACC AAAAAGAAAAAAAATATTGTGTTGGAGGTTTGCAAGGATATGCCAGCATGGCCAGGGAGACACTTGTTAGAGGGTGGAGATCATCGTCGATACTTTGGAC TGAAAACACTAGCTAGAGGCATCGTGGAGTTTGAGTGCAAGAACCAGAGGGAACACGATATCTGGACTCAAGGTGTTTCGAGGCTTCTCTCTACTGTATC CCAAAGAAAAAACAGAATTCTTCAATTTTAG
AA sequence Show only first row Show all	>Potri.005G213800.2 pacid=42803858 polypeptide=Potri.005G213800.2.p locus=Potri.005G213800 ID=Potri.005G213800.2.v4.1 annot-version=v4.1 MEEIPLINLRRPDYSPLCSNIPLPESPKLPMEFLSRSWSVSALEVSKSLSCMASNKSASSSSCTTASSIPEDVTGEMTEEIVQTNPSANYQFSFASSATS QLLLERIMSQSEVSPLASGRLSHSSGPLNLTESDSPPISPSDDFEDIVKYFRTHNSLNPLFNGGRASAGPGSGAPPSGSKTVGRWLKDRKEKKKEETRAQ NAQLHAAVSVAAVASAIAAIAAATASASAARRNEQLARTDMAVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVHSHDDITTLTAAAATALRGAAT LKARALKDVLNVAAAIPIERCTGICGAGNNGHHNRSYSGELVNGENFLGACSVEFLARGSELLKRTRQGDLHWKIVSVYLHRTGQVMLKMKSRHVAGTIT KKKKNIVLEVCKDMPAWPGRHLLEGGDHRRYFGLKTLARGIVEFECKNQREHDIWTQGVSRLLSTVSQRKNRILQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	0	1
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	1.00	0.9132
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052400 [exp]	3.16	0.8759
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	3.16	0.8574
AT3G52490			Double Clp-N motif-containing ...		Potri.008G017600 [exp]	3.74	0.9038
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Potri.013G040600 [exp]	3.74	0.8512
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	4.58	0.8787
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	7.21	0.8785
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162500 [exp]	7.34	0.8484	PME2.16
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.006G154500 [exp]	8.48	0.8553
AT5G17760			P-loop containing nucleoside t...		Potri.005G119900 [exp]	9.00	0.8342

Compare expression of checked genes

Potri.005G213800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.