Plant FIBer expression Database

Potri.005G213900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03070 260 / 9e-88 Bax inhibitor-1 family protein (.1.2)
AT3G63310 259 / 9e-88 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1)
AT4G02690 255 / 6e-86 Bax inhibitor-1 family protein (.1)
AT4G15470 176 / 1e-54 Bax inhibitor-1 family protein (.1)
AT4G14730 174 / 2e-54 Bax inhibitor-1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G214000
[exp]
263 / 3e-89 AT1G03070 310 / 2e-107 Bax inhibitor-1 family protein (.1.2)
Potri.002G049000
[exp]
262 / 8e-89 AT1G03070 393 / 2e-140 Bax inhibitor-1 family protein (.1.2)
Potri.008G157100
[exp]
209 / 5e-68 AT3G63310 243 / 4e-81 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1)
Potri.010G028900
[exp]
176 / 7e-55 AT4G15470 348 / 2e-122 Bax inhibitor-1 family protein (.1)
Potri.008G199200
[exp]
172 / 5e-53 AT4G15470 348 / 3e-122 Bax inhibitor-1 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022085
[exp]
262 / 2e-88 AT1G03070 406 / 3e-145 Bax inhibitor-1 family protein (.1.2)
Lus10042631
[exp]
261 / 3e-88 AT1G03070 408 / 5e-146 Bax inhibitor-1 family protein (.1.2)
Lus10004077
[exp]
253 / 6e-85 AT1G03070 404 / 2e-144 Bax inhibitor-1 family protein (.1.2)
Lus10041240
[exp]
167 / 2e-51 AT4G15470 369 / 2e-130 Bax inhibitor-1 family protein (.1)
Lus10021950
[exp]
108 / 1e-28 AT4G15470 288 / 8e-99 Bax inhibitor-1 family protein (.1)
Lus10004078
[exp]
52 / 1e-07 AT4G02690 85 / 2e-19 Bax inhibitor-1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0453 Apoptosis-Inhib PF01027 Bax1-I Inhibitor of apoptosis-promoting Bax1
Representative CDS sequence
>Potri.005G213900.2 pacid=42805025 polypeptide=Potri.005G213900.2.p locus=Potri.005G213900 ID=Potri.005G213900.2.v4.1 annot-version=v4.1
ATGTGGATGAATCCCAGGCAGAGGAGAAATTTCGAGGTTGGAGAATATCCAGCTGAACTGGACGGTCCGAGGTACCGCTGGGTCTTCATTCGTAAAGTTT
ATACAATCATTGCCATACAACTGCTAGTCACTGTTGCGGTGGCAACCGCAGTTGTTTCAGTCCATTCCATTTCAAACTTCATCGTGCACACTAAGGTGGG
ATTGGCTGTCTATATAGCTATCATTGTTATTCCTTTTATTGTCTTGTGTCCATTATATTACTTTTACCAGCTACGCCCACTGAATTATCTTCTCCTTGGA
GTTTTTACCACTGCTCTCGGATTTCTGGTTGGACTTACATGTGCGTTTACCAGTGGGAAGGTTATTTTGCAATCTGCCATCATAACTTTCACGGCCATGG
TTATTCTCACTCTGTACACCTTCTGGGCGGCAAGGAGAGGTCATGATTTCAGCTTCCTCGGGCCTTTCTTGTCTGCTTCCCTGATTGCTCTTCTGTTGTT
TGCTCTGATTCAGATTTTCTTTCCCTTGGGTAGGATTTCTGTAATGATCTTTGGGTGCTTGGCATCGATCTTATTTTGCGGGTTCATAATATACGATACA
GACAGCCTGATCAAACGTTATGCTTATGATGAGTACATTTGGGCTGCAGTCTCGTTGTATCTGGATATCATTAATCTTTTCCTTAGTATTCTAACTGTCT
GCAGTGCCCGAGATAGCTAG
AA sequence
>Potri.005G213900.2 pacid=42805025 polypeptide=Potri.005G213900.2.p locus=Potri.005G213900 ID=Potri.005G213900.2.v4.1 annot-version=v4.1
MWMNPRQRRNFEVGEYPAELDGPRYRWVFIRKVYTIIAIQLLVTVAVATAVVSVHSISNFIVHTKVGLAVYIAIIVIPFIVLCPLYYFYQLRPLNYLLLG
VFTTALGFLVGLTCAFTSGKVILQSAIITFTAMVILTLYTFWAARRGHDFSFLGPFLSASLIALLLFALIQIFFPLGRISVMIFGCLASILFCGFIIYDT
DSLIKRYAYDEYIWAAVSLYLDIINLFLSILTVCSARDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G63310 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYL... Potri.005G213900
[exp]
0 1
AT2G31510 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE... Potri.007G126900
[exp]
12.04 0.9203
AT5G44120 ATCRA1, CRU1, C... CRUCIFERINA, RmlC-like cupins ... Potri.005G224700
[exp]
17.17 0.9839 GY4.2
AT5G41470 Nuclear transport factor 2 (NT... Potri.003G131500
[exp]
18.30 0.9627
Potri.009G020201
[exp]
20.49 0.9839
AT5G05800 unknown protein Potri.014G061450
[exp]
21.90 0.9839
AT5G08391 Protein of unknown function (D... Potri.017G064301
[exp]
22.58 0.9411
Potri.003G081133
[exp]
24.04 0.9834
Potri.007G040950
[exp]
29.46 0.9838
AT1G30870 Peroxidase superfamily protein... Potri.010G175100
[exp]
30.49 0.9837
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.009G155050
[exp]
31.03 0.9384

Potri.005G213900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.