Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19670 59 / 3e-11 CORI1, ATHCOR1, ATCLH1 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) AT5G43860 48 / 1e-07 ATCLH2 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214200 [exp] 166 / 1e-51 AT1G19670 237 / 7e-76 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Potri.010G082300 [exp] 51 / 1e-08 AT5G43860 370 / 1e-128 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004076 [exp] 59 / 3e-11 AT1G19670 234 / 6e-75 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Lus10014702 [exp] 57 / 2e-10 AT1G19670 229 / 4e-73 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1) Lus10039372 [exp] 50 / 6e-08 AT5G43860 392 / 2e-137 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07224 [poplar] [flax] Chlorophyllase Chlorophyllase
Representative CDS sequence Show only first row Show all	>Potri.005G214100.1 pacid=42805425 polypeptide=Potri.005G214100.1.p locus=Potri.005G214100 ID=Potri.005G214100.1.v4.1 annot-version=v4.1 ATGGAAACACGCTTGGTATTTCTTTTGGCAGCGTTGTTGGCAACAGCACTGCTGGAATCTAAGCCTGTTTTGCCAACACTAGCGTCTGAAGCTGATCACT CAGTTTCGGGTGTTTTCAAAACAGGAAAATTTCACCCAATACATTCTGATGTAGGAACAGCCTCTAGCTGTTCACCTCCTAGATCCTTGTTAATTGTTAG ACCAGAAGAAAAGGGCACGTGTCCTGTCATCTTGTTTCACCACGGCACAGGCTGCCAGAACTCTTGGTACACTGATGTTTTCAAATTCATGTCTTCTCAT GGATACATAGTGGTCGCACCGCAGGTTATTAAACCTTGA
AA sequence Show only first row Show all	>Potri.005G214100.1 pacid=42805425 polypeptide=Potri.005G214100.1.p locus=Potri.005G214100 ID=Potri.005G214100.1.v4.1 annot-version=v4.1 METRLVFLLAALLATALLESKPVLPTLASEADHSVSGVFKTGKFHPIHSDVGTASSCSPPRSLLIVRPEEKGTCPVILFHHGTGCQNSWYTDVFKFMSSH GYIVVAPQVIKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Potri.005G214100 [exp]	0	1
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.001G369700 [exp]	3.60	0.9345
AT2G27240			Aluminium activated malate tra...		Potri.001G217050 [exp]	6.63	0.8971
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Potri.011G062000 [exp]	7.87	0.9232
AT3G47800			Galactose mutarotase-like supe...		Potri.017G080100 [exp]	8.00	0.9032
AT1G03670			ankyrin repeat family protein ...		Potri.013G134500 [exp]	13.63	0.8834
AT5G18470			Curculin-like (mannose-binding...		Potri.013G050500 [exp]	13.85	0.9052
AT1G24140			Matrixin family protein (.1)		Potri.013G033200 [exp]	18.33	0.8884
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022402 [exp]	18.54	0.8880
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.016G143833 [exp]	18.65	0.9176
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Potri.010G124200 [exp]	21.49	0.8913	Pt-JAG.1

Compare expression of checked genes

Potri.005G214100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.