Plant FIBer expression Database

Potri.005G214200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19670 238 / 4e-76 CORI1, ATHCOR1, ATCLH1 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
AT5G43860 225 / 3e-71 ATCLH2 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G082300
[exp]
233 / 2e-74 AT5G43860 370 / 1e-128 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1)
Potri.005G214100
[exp]
167 / 2e-51 AT1G19670 59 / 2e-11 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014702
[exp]
243 / 8e-78 AT1G19670 229 / 4e-73 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
Lus10004076
[exp]
240 / 7e-77 AT1G19670 234 / 6e-75 CORONATINE-INDUCED PROTEIN 1, chlorophyllase 1 (.1)
Lus10039372
[exp]
216 / 1e-67 AT5G43860 392 / 2e-137 ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, chlorophyllase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF12695 Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence
>Potri.005G214200.1 pacid=42802795 polypeptide=Potri.005G214200.1.p locus=Potri.005G214200 ID=Potri.005G214200.1.v4.1 annot-version=v4.1
ATGCACAGAAAGAAAATGGAAACACCCTTGGTATTTCTTTTGGCAGCGTTGTTGGCAACAGTGCTGCTGGAATATAAGCCTGTTTTGCCAACACTAGCGT
CTGAAGCTGATCACTCTGTTTGGGCAGAAGTTGGTGTTTTCGAAACAGGAAATTTTCACCCAATACAATCTGATGTAGGAACAGCCTCTAGCTGTTCACC
TCCTAGATCCTTGTTGATTTTTAGGCCAGAAGAAAAGGGCACGTATCCTGTCATCTTGTTTCACCACGGCACAGGCTGCCAGAACTCTTGGTACACTGAT
GTTTTCAAATTCATCTCTTCTCATGGATACATAGTGGTCGCACCGCAGTTATACGGATTGAAACCACCTAGCGGACAAGACGAGCTTGACTCGGCAGCAG
AAGTGGCAAACTGGTTACCCTCAGGTCTCCGGTGTGTGCTACCTGAAGATATTGAAGGGGACATACACAACCTTGCTCTTGCAGGCCACAGTAGGGGTGG
ATACATTGCATTTGCTCTTGCACTTGGGCTTGCCGATGTTTCCTTAGACGTTGACTTTTCAGCGCTGATAGGAGTAGACCCCGTTGCGGGGACTTCCAAA
ACTAATCAGATGGAGCCCAAAATACTCAATTACGAATCTTGCTCTTTTAACTTTTCGATTCCTGTCGCCATAATTGGTACTGGGTTAGGCAATAAGCCAG
CCTTCCCCATCTTACCGCAGACGTGTGCTCCAGATGGGGTGAGCCACACGGAGATTTTCAATGAGTGCAAACCTCCATGTAGCCATTTTGTTACTACAGA
CTATGGCCACATGGACGTTTTAGATGACGATATAGGTCTAATTGGGGAAGGAGCCCGAGCGATGTGCAAGGGGTCTCGGTGGGGGGTTAGCAGGGATCCC
ATGAGAAGAACTGTAGGTGGCGTTTCTGTCGCCTTTTTAGAGGCTTTCTTCAAAGGCAACTACACGGACTACAACAAAATTCTGCAAAAACCTAATTATT
TTGCTCCTGCAACACTTGATCCAGTCCAGAACAAAAGTGAAGGGACATCGTGCTCAAGTTTATCTGCAATGTCCGTTGATGAACTCTAG
AA sequence
>Potri.005G214200.1 pacid=42802795 polypeptide=Potri.005G214200.1.p locus=Potri.005G214200 ID=Potri.005G214200.1.v4.1 annot-version=v4.1
MHRKKMETPLVFLLAALLATVLLEYKPVLPTLASEADHSVWAEVGVFETGNFHPIQSDVGTASSCSPPRSLLIFRPEEKGTYPVILFHHGTGCQNSWYTD
VFKFISSHGYIVVAPQLYGLKPPSGQDELDSAAEVANWLPSGLRCVLPEDIEGDIHNLALAGHSRGGYIAFALALGLADVSLDVDFSALIGVDPVAGTSK
TNQMEPKILNYESCSFNFSIPVAIIGTGLGNKPAFPILPQTCAPDGVSHTEIFNECKPPCSHFVTTDYGHMDVLDDDIGLIGEGARAMCKGSRWGVSRDP
MRRTVGGVSVAFLEAFFKGNYTDYNKILQKPNYFAPATLDPVQNKSEGTSCSSLSAMSVDEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19670 CORI1, ATHCOR1,... CORONATINE-INDUCED PROTEIN 1, ... Potri.005G214200
[exp]
0 1
AT5G16340 AMP-dependent synthetase and l... Potri.019G067900
[exp]
1.00 0.9510
AT3G61220 SDR1 short-chain dehydrogenase/redu... Potri.014G080100
[exp]
3.00 0.9069
AT3G47800 Galactose mutarotase-like supe... Potri.017G080200
[exp]
4.00 0.9039
AT1G68320 MYB BW62C, BW62B, A... myb domain protein 62 (.1) Potri.010G123000
[exp]
14.76 0.7782
Potri.011G125551
[exp]
16.43 0.9070
AT1G15520 ATABCG40, ABCG4... Arabidopsis thaliana ATP-bindi... Potri.001G048800
[exp]
25.53 0.8033
AT1G16260 Wall-associated kinase family ... Potri.001G040500
[exp]
25.65 0.8575
AT3G48520 CYP94B3 cytochrome P450, family 94, su... Potri.005G220900
[exp]
27.71 0.8208 CYP94.8
Potri.014G151950
[exp]
32.78 0.8816
AT4G20970 bHLH bHLH162 basic helix-loop-helix (bHLH) ... Potri.012G079100
[exp]
34.49 0.8390

Potri.005G214200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.