Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14720 151 / 4e-43 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) AT4G14713 150 / 1e-42 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2) AT3G17860 45 / 5e-05 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G70700 42 / 0.0003 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G48500 42 / 0.0003 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3) AT4G32570 42 / 0.0007 ZIM TIFY8 TIFY domain protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048500 [exp] 479 / 8e-171 AT4G14720 95 / 6e-22 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.003G068900 [exp] 52 / 1e-07 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.008G133400 [exp] 49 / 2e-06 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 49 / 3e-06 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.006G139400 [exp] 46 / 1e-05 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.015G035800 [exp] 46 / 3e-05 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.012G044900 [exp] 45 / 3e-05 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.018G047100 [exp] 45 / 3e-05 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.001G166200 [exp] 44 / 7e-05 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000490 [exp] 286 / 7e-94 AT4G14720 184 / 8e-55 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10014700 [exp] 249 / 4e-80 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10039911 [exp] 48 / 6e-06 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10013166 [exp] 45 / 2e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10027648 [exp] 45 / 7e-05 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10031333 [exp] 45 / 9e-05 AT3G17860 155 / 8e-44 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10008129 [exp] 43 / 0.0002 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10017991 [exp] 42 / 0.0004 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10041986 [exp] 42 / 0.0005 AT3G17860 174 / 4e-51 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [poplar] [flax] tify tify domain
Representative CDS sequence Show only first row Show all	>Potri.005G214300.6 pacid=42803775 polypeptide=Potri.005G214300.6.p locus=Potri.005G214300 ID=Potri.005G214300.6.v4.1 annot-version=v4.1 ATGCAGCCGGGAGAGACAGTTTTCCGGTCAGCTCTGGACAAACCCCTACACCAGCTAACAGAAGATGATATTTCTCAGGTCACTCGCGAAGATTGCCGCC GTTACCTCAAAGAAAAAGGTATGAGAAGGCCGTCGTGGAACAAATCGCAGGCAATACAGCAAGTGATTTCACTCAAAACACTCCTGGAAGCGACGCCGGA GACTGAATCTCCAAGGCGACGACTCTACATTCCCCGTCCTCCTCCTCATCCTCCTGATAATACTCCTCGTGTCCCTCCAAATTCCTCTGTTTCAGAGAGG GGAGCAAGTGCTGAAACGCCGATCTCGGTGCCAGCCGAGGAGCCAGTTCCGTGCCGGCAACACGATCCTCCAAATCCCGATGATCCTGCCGATCCTCTGC CTCCTGTCCATGCCGCCGTCACCGAGAATGCTTCGGTTTCACCAAGAACTACAGGCATGGCAGAAGAATCAGCAGGACAGATGACAATTTTTTACTGTGG GAAGGTAAACGTCTATGATGATGTACCGGGAGACAAGGCGCAAGCAATAATGCATCTTGCTGCAAGCCCATTTGCTCCACCTCAGGATGCTTCTTCAGAT GTAATTCCTACATTAAGGCCTTTACAATGCCAGTTAGACACTCCAGGTGTCAAAGCTGCTCCAAATTCAATTGTGGCGAACTTTCCAACCCTGCCAACAG TGAAAGGGGCAGATAGTGGTCAGCTTCTCTGGGAAGAAAGCAACATAGCTCGTGAAGACAACCTAGAAGGCTCTACAAGCAGAAAAGCATCCTTACAAAG ATATTTTGAGAAGAAGAAAGACAGGTTCAAGAACAAGAGAAAGGTGGCAGTGCCTTCTGCTAGCTTGGACGTCTTCTTAAGCCATCTGGTTGGAGATCAA ATCTCAAATGATCATTGGAACCTAAATGATGCCTGCTCTCCTTCCCAACCCAGGCCTCCCCAAACGCCTAACCGGTGCAACTCTGTTGACAATGTAGCAA AAAATGGCATCCTCAAAGCTGACCTTAACAACAAAGATGTCCCAGAAATCTGA
AA sequence Show only first row Show all	>Potri.005G214300.6 pacid=42803775 polypeptide=Potri.005G214300.6.p locus=Potri.005G214300 ID=Potri.005G214300.6.v4.1 annot-version=v4.1 MQPGETVFRSALDKPLHQLTEDDISQVTREDCRRYLKEKGMRRPSWNKSQAIQQVISLKTLLEATPETESPRRRLYIPRPPPHPPDNTPRVPPNSSVSER GASAETPISVPAEEPVPCRQHDPPNPDDPADPLPPVHAAVTENASVSPRTTGMAEESAGQMTIFYCGKVNVYDDVPGDKAQAIMHLAASPFAPPQDASSD VIPTLRPLQCQLDTPGVKAAPNSIVANFPTLPTVKGADSGQLLWEESNIAREDNLEGSTSRKASLQRYFEKKKDRFKNKRKVAVPSASLDVFLSHLVGDQ ISNDHWNLNDACSPSQPRPPQTPNRCNSVDNVAKNGILKADLNNKDVPEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Potri.005G214300 [exp]	0	1
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Potri.002G205800 [exp]	2.44	0.7570
AT4G27290			S-locus lectin protein kinase ...		Potri.010G015400 [exp]	3.31	0.7921
AT1G74150			Galactose oxidase/kelch repeat...		Potri.013G008200 [exp]	4.58	0.7679
AT5G20260			Exostosin family protein (.1)		Potri.006G064900 [exp]	8.24	0.7676
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Potri.011G052400 [exp]	15.49	0.7625
AT3G60670			PLATZ transcription factor fam...		Potri.002G144900 [exp]	20.49	0.7183
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.014G035800 [exp]	22.04	0.7206	PDE135.1
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.004G213300 [exp]	23.04	0.7410
AT1G68470			Exostosin family protein (.1)		Potri.001G381900 [exp]	28.37	0.7521
AT3G50940			P-loop containing nucleoside t...		Potri.008G177200 [exp]	29.29	0.7168

Compare expression of checked genes

Potri.005G214300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.