Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63340 305 / 9e-95 Protein phosphatase 2C family protein (.1.2) AT4G26080 126 / 2e-32 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT5G57050 120 / 2e-30 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT1G72770 115 / 3e-28 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT5G53140 114 / 7e-28 Protein phosphatase 2C family protein (.1) AT4G31750 109 / 5e-27 WIN2 HOPW1-1-interacting 2 (.1) AT1G43900 110 / 6e-27 Protein phosphatase 2C family protein (.1) AT1G17550 111 / 2e-26 HAB2 homology to ABI2 (.1) AT5G51760 108 / 7e-26 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT5G24940 105 / 1e-24 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214650 [exp] 293 / 7e-90 AT3G63340 1166 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.012G002100 [exp] 120 / 1e-30 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.006G224600 [exp] 119 / 2e-29 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.018G060300 [exp] 117 / 2e-28 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.018G013900 [exp] 111 / 6e-28 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 111 / 7e-28 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G186001 [exp] 110 / 7e-28 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.015G018800 [exp] 108 / 2e-26 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.002G074500 [exp] 107 / 2e-26 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000491 [exp] 280 / 2e-85 AT3G63340 1054 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10014699 [exp] 135 / 9e-35 AT3G63340 360 / 4e-112 Protein phosphatase 2C family protein (.1.2) Lus10019012 [exp] 119 / 7e-30 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 117 / 7e-30 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10025000 [exp] 115 / 9e-28 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10026447 [exp] 113 / 3e-27 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10026239 [exp] 108 / 4e-27 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 108 / 5e-27 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 108 / 1e-26 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 106 / 4e-26 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.005G214500.1 pacid=42805279 polypeptide=Potri.005G214500.1.p locus=Potri.005G214500 ID=Potri.005G214500.1.v4.1 annot-version=v4.1 ATGTCTTGTAAGAAAATTTTAGGTTTCTGCAGAACTTTCACCAAACTTGGATTAATGGGCAGATTCAATATTACATCTTTTTCAATACCATTTGTACTTC TTTTCATCAAATCCATTCAATCTTCTCATGGGTTATCAGTGTCATGTATGATAGATTACGATAATGGTGGTGCCCCTGCAGTTTATGAGTCTCAAGAGTG TCCACGATGGGTTCTCTCTAATGGGTCTCTTAAAAATCAGAATATCAAGAACTGCCAGTTCGCCACACTCCAAGGACGCAGGGAGTATCAAGAAGACCGT GTAGTGTGCAATCTTGATATGAAACTACCCTTGCTAAAGAACAACTCTCTTCTTGATTTTGAAGAGGATACAGTTGGTATTGTAGCCGTTTTTGATGGGC ATGGTGGTAAAGAAGCGAGTGAGATGGGGTCAAAGCTTTTGTTTGATTACTTTAAGGTGCACCTTGTGTTTCTGTCATATAAGCTAATGGGAATATACAA AGGAGAGATGCCTTTGAGTGATTATAAAGCCAATAAATTGGGGGTTTTAAGAGAATCATTGTTGAAGACAATTTTTGACATTGATCTTAAGTTTACTCAG GAGGCTATTAAAAATGGCTATTTCTCAGGCTCTACTGCCAATGTGGTTCTTTTGTATGATGGGCAGATTTTAGTTGCCAATGTTGGTGATTCTAAGGCTC TTCTCATGTCAGAGAAAATCCCTTCTGGTGATTCAAGAGTAAATCTTTCAGCTACAGAACTGACATATGATCATCACCCAGAGAGGGAAGATGAGAAGGC AAGAATTAAAACAGCTGGTGGTTCTGTTATTGTATGGGGTGTGCCTAGAGTGAATGGAGTGCTTGCAATGTCTCGGTCCATTGGTGATGTAGCCTTAAAA AGGTTTGGTGTTATAGCCGAGCCTGAGTTTACAGGTTGGAGAGTTTTAACTGCAAATGATAGCTACTTGGTGGTAGCATCTGATGGTATATTTGAGAGCT TGAAACCACAAGATGTAGCTGAGCTGATATTTGAATGGAATTTAATTCCTGAAAGGAGAGAAGAATCAAAGCTTCCACTTTCATGCATGTTTTCTGAATC GCTGGCAGAGTGTATAATAACAATTGCATATGAGAAAGGGAGTCATGATAACTTGTCTGCTATTGTAGTTCCTTTGTGA
AA sequence Show only first row Show all	>Potri.005G214500.1 pacid=42805279 polypeptide=Potri.005G214500.1.p locus=Potri.005G214500 ID=Potri.005G214500.1.v4.1 annot-version=v4.1 MSCKKILGFCRTFTKLGLMGRFNITSFSIPFVLLFIKSIQSSHGLSVSCMIDYDNGGAPAVYESQECPRWVLSNGSLKNQNIKNCQFATLQGRREYQEDR VVCNLDMKLPLLKNNSLLDFEEDTVGIVAVFDGHGGKEASEMGSKLLFDYFKVHLVFLSYKLMGIYKGEMPLSDYKANKLGVLRESLLKTIFDIDLKFTQ EAIKNGYFSGSTANVVLLYDGQILVANVGDSKALLMSEKIPSGDSRVNLSATELTYDHHPEREDEKARIKTAGGSVIVWGVPRVNGVLAMSRSIGDVALK RFGVIAEPEFTGWRVLTANDSYLVVASDGIFESLKPQDVAELIFEWNLIPERREESKLPLSCMFSESLAECIITIAYEKGSHDNLSAIVVPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63340			Protein phosphatase 2C family ...		Potri.005G214500 [exp]	0	1
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.010G073700 [exp]	1.73	0.8902
AT2G30942			Protein of unknown function (D...		Potri.002G263100 [exp]	2.82	0.8574
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.018G017300 [exp]	4.00	0.8733
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.004G130400 [exp]	6.00	0.8673
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.015G005000 [exp]	8.71	0.8271
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Potri.015G035300 [exp]	10.48	0.8486
					Potri.010G102250 [exp]	14.49	0.8238
AT2G15695			Protein of unknown function DU...		Potri.009G103500 [exp]	15.81	0.8206
AT2G16070		PDV2	plastid division2 (.1.2)		Potri.009G111000 [exp]	16.12	0.8325
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.015G053400 [exp]	16.24	0.8233

Compare expression of checked genes

Potri.005G214500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.