Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63340 1165 / 0 Protein phosphatase 2C family protein (.1.2) AT3G63320 409 / 2e-132 Protein phosphatase 2C family protein (.1) AT4G31750 100 / 1e-22 WIN2 HOPW1-1-interacting 2 (.1) AT1G07160 100 / 2e-22 Protein phosphatase 2C family protein (.1) AT5G10740 100 / 2e-22 Protein phosphatase 2C family protein (.1) AT5G24940 101 / 3e-22 Protein phosphatase 2C family protein (.1) AT1G72770 102 / 4e-22 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT5G57050 100 / 6e-22 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT2G30020 99 / 1e-21 Protein phosphatase 2C family protein (.1) AT4G26080 97 / 8e-21 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214500 [exp] 289 / 8e-88 AT3G63340 304 / 3e-94 Protein phosphatase 2C family protein (.1.2) Potri.006G267600 [exp] 101 / 3e-23 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 101 / 4e-23 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.001G092100 [exp] 102 / 6e-23 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1) Potri.005G186001 [exp] 99 / 1e-22 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 99 / 3e-22 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 99 / 2e-21 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.006G224600 [exp] 99 / 6e-21 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.018G060300 [exp] 98 / 1e-20 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000491 [exp] 1290 / 0 AT3G63340 1054 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10014699 [exp] 488 / 6e-160 AT3G63340 360 / 4e-112 Protein phosphatase 2C family protein (.1.2) Lus10042430 [exp] 101 / 2e-23 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 101 / 2e-23 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 100 / 2e-22 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 99 / 2e-22 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10041072 [exp] 92 / 9e-20 AT1G07160 238 / 3e-76 Protein phosphatase 2C family protein (.1) Lus10029745 [exp] 95 / 1e-19 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10025000 [exp] 94 / 2e-19 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10030340 [exp] 87 / 3e-19 AT2G40180 160 / 7e-48 phosphatase 2C5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.005G214650.1 pacid=42803273 polypeptide=Potri.005G214650.1.p locus=Potri.005G214650 ID=Potri.005G214650.1.v4.1 annot-version=v4.1 ATGCGAATCAGTCCTTTTCCTCTTCTCCTTTCTCTACTCTCCTTTTCATCTCAAAAACCTAAAACTCGATGCCACCGCACAATGAATCCGGTGTTCAATT GGAAGCTATCAGTTTTAGGGTTTATCATTTTTACCATATACACAACATCACGCTGCGTCGGAGAATCGTCGACTTGTTTAACGGTGTACAAAGAAGGCGG TGCAGCAGCAGTGTTTCAATCCCCAAAATGCCCTCGCTGGAACCTTCCGAATTATGATTCTCGACCACGGTCCACCGCCACAGCCCCCAGTAGCCTTTGC CAATCAGCCATGCTTCAAGGCCGAAGAAAGTCTCAGGAGGATCGCACTCTCTGTGCTCTCGACTTTCGCATTCCATTTCCTGGTAAGGTAGGGGTTAAGG AGGTTGTGGTTGGAATTGTGGCAGTTTTTGATGGCCATAATGGTGCAGAGGCTAGTGAGATGGCTTCAAAGCTTTTATTGGAGTATTTTGCTTTGCATAC TTATTTTCTTTTAGATGCAACATATTCTTTTGTTTTCAAGAAATCGAATGGAAGGTTGCCGAATGAGGGAGAAAAAGATGTAGTTTTTCAAGTGCTAAAT TGGGGAGAGGAATCTGGTCAGCGGAAATTGAACTTTGAAAGGTTTAAATTTTCTCTGCCAACAAATTTTGATGATTCTTTTCATTTGGATATCTTGAAGG AAGCATTATTGAGGGCAATTCATGATATTGATGCAACATTTTCTAAGGAAGCATCCAAAAATAATCTTGATTCTGGTTCTACGGCCACTGTTGCATTGAT GGCAGATGGTCAAATTTTAGCTGCCAACATTGGAGATTCAAAGGCTCTTCTGTGCTCTGAAAAGTTTCAGTCTCCTGCAGAGGCAAAAGCCACTTTATTA AGGATATACAGGGAGCAGAGACGTGATGGGGCAGTTTCACCTGCCAGGTATTATGGCAACATCAAATCAACATCATCCAATGGACCTACACATTTGATTG TCCAGCAATTAACTAGAGATCATCATCCAGATAGAGATGATGAAAGGTTTCGAGTGGAAAATGCTGGTGGATATGTACTTGAGTGGGGTGGGGTGCCTCG AGTAAATGGTCAATTGGCTGTTTCCCGAGCTATTGGCGATTTGCATCTAAAAGGCTATGGAGTTATATCTGCACCAGAAGTGACAGATTGGCAGCCTCTA ACCACAAATGATAGCTATCTGGTGGTTGCATCTGATGGTATATTTGAAAAGTTGGGTTTGCAGGATACTTGTGATCTACTGTGGGAAGTACATAGTCATG GTACTGAGAGGCCTGGACTCTCTTCTTCATGCTCATACTCATTAGCTGAATGCTTAGTAAATACTGCTGTTGAAAAGGGCAGCATGGACAATGCGGCAGC TGTTGTGGTTCCATTAGGATCCATTGGAATTTCACAAAAAATATCGAGGGACAGTTGTGATGGAGAGGGGGATATACATTGCTCAACAATAGGACACAGA AACTTCATGGATGAACAATCAGCTAATGAAGGGTCTTCTGATCTTGTGCAATTGGACCATGGACATTCAGTTACCACCAAGTTTGAAAAGTTACTGATCA AGGGAAAGCAGAGGAATTTTGGCTGTTATTACTTGTCTGAGAACCTTAATGATAATCTGGAGATGTTAGGGGCTCAAAAAAATGACGGGATAGATTATAT GTATGATCTACCTCAGGCTCTACCAGAGGCCTTCAATCACCGCTATGGTGGACCTGTGAATTTATATAATGACCAGAATATGTGCTTGCATTTTGGAATG ACTATTGATGGAGTTACAGACCAATGCATTCATCCTGAAGGCTTTGCTAGTTTCCTTGGCTTGCTTGAATCTATTCCTTTTCATGATGTTGGTTCAAATT ATGGATCAACTGAGCATGCAATGCCTGACTTAAGGTATGTGCTAAAGAAAAGGTTTGGTCGTGGATCGTATGGTGAAGTATGGCTGGCTTTTTATTGGAA TTGTCATCAAGATCATAATGCTTCAAGTTGGAGTAAAAGGAATGGACATTCCTCGTTTGATGCTAGTTTAAATTCAACTAAAAGAAATTCCAGTTGTGGC AGTGCTAATGATTTTAGTTCTGGTTCTCCTGATGGTGACTTGTTCATTTTGAAACGAATCATGGTGGAGAGAGGAGCTGCTGTTTACTTAAGTGGTCTGC GGGAAAAATATTTTGGTGACGTATTCTTAAATGCATCCAGGTGTCTTGGAGACTTACAGTCAGATGGGATCAAAACCTCTTTATTTGAAGAAATGCGATC AGATTATGACCTGCTAGAAACTAATGAATCAGTGTATGGATTAGGAAGCGGATGGAGTTTTGAAAATATGTTCCCGAACAAATTTAGAACCATGAGAGCT ACCTTTGAAGAAGGTTTGAGTCATATAGCAAGATATGTAGAATCTTTTGAATCTCGATCTAATGAGATCTGGCTTGTATTTCATCATGAAGGCGTGTCTT TGTCAAAGCTTATTTATACTGTGGAAGAGGCAGAAAATGTCTCTGACAGAGAAAAGGTTGAAGAAGTAAAACGGATTGAGGTATTGCAGCCATCAAAATG GTGGCATTGGTTGAAGACAACAAAAGCAGGGAAAGAGGAAATGCGCAACCTTTTATGGCAATTGTTGATAGCACTCAAGTCCTGTCATGACCGCAACATC ACCCACAGAGATATCAAACCTGAGAACATGGTGGTATGCTTAGAAGATCAGCACACTGGGAGATGCTTGAAAGGAGGTCCAAGTGGAGATAAGAACTATA CCGTTAAAATGCGGATTATTGATTTTGGTAGTGCAATGGATGAATTCACTCTGAAGCATCTGTATGGGTCAACCGGACCTTCTAGGGCTGAACAAACTTC TGAGTATTCTCCTCCAGAAGCTTTTCTTAATGCTAGTTGGTATCATGGGCCAGCAAGCACAAATTTAAAGTATGATATGTGGAGTGTTGGTGTCGTGATG CTAGAGTTGATATTAGGAACACCAAATGTTTTTCAGATTAGTGCTCGCACTCAAGCTCTTTTAGATCCACATATTGTTGGTTGGAACGAAGACTTGAAGG AACTCGCGTACAAACTCAGGGCATTCATGGAATTATGTATCTTAATCCCAGGGAGTTCCTCAAAGCATCATCGCTCAACGGGTCGGGTTGGAGATTCACC AGCTTCCTGGAAATGCTCTGAAGAGTTCTTCTCCAATCAAATAAAGAATAGGGATCCTCTGAAAATAGGGTTTCCTAATGTTTGGGCTTTGCGATTGGTG CGCCAACTGTTACTTTGGGATCCAGAGGATCGATTAAGTGTTGATGATGCTTTGCAGCATCCTTATTTCCAACCTCCTCCCAAGAGATGA
AA sequence Show only first row Show all	>Potri.005G214650.1 pacid=42803273 polypeptide=Potri.005G214650.1.p locus=Potri.005G214650 ID=Potri.005G214650.1.v4.1 annot-version=v4.1 MRISPFPLLLSLLSFSSQKPKTRCHRTMNPVFNWKLSVLGFIIFTIYTTSRCVGESSTCLTVYKEGGAAAVFQSPKCPRWNLPNYDSRPRSTATAPSSLC QSAMLQGRRKSQEDRTLCALDFRIPFPGKVGVKEVVVGIVAVFDGHNGAEASEMASKLLLEYFALHTYFLLDATYSFVFKKSNGRLPNEGEKDVVFQVLN WGEESGQRKLNFERFKFSLPTNFDDSFHLDILKEALLRAIHDIDATFSKEASKNNLDSGSTATVALMADGQILAANIGDSKALLCSEKFQSPAEAKATLL RIYREQRRDGAVSPARYYGNIKSTSSNGPTHLIVQQLTRDHHPDRDDERFRVENAGGYVLEWGGVPRVNGQLAVSRAIGDLHLKGYGVISAPEVTDWQPL TTNDSYLVVASDGIFEKLGLQDTCDLLWEVHSHGTERPGLSSSCSYSLAECLVNTAVEKGSMDNAAAVVVPLGSIGISQKISRDSCDGEGDIHCSTIGHR NFMDEQSANEGSSDLVQLDHGHSVTTKFEKLLIKGKQRNFGCYYLSENLNDNLEMLGAQKNDGIDYMYDLPQALPEAFNHRYGGPVNLYNDQNMCLHFGM TIDGVTDQCIHPEGFASFLGLLESIPFHDVGSNYGSTEHAMPDLRYVLKKRFGRGSYGEVWLAFYWNCHQDHNASSWSKRNGHSSFDASLNSTKRNSSCG SANDFSSGSPDGDLFILKRIMVERGAAVYLSGLREKYFGDVFLNASRCLGDLQSDGIKTSLFEEMRSDYDLLETNESVYGLGSGWSFENMFPNKFRTMRA TFEEGLSHIARYVESFESRSNEIWLVFHHEGVSLSKLIYTVEEAENVSDREKVEEVKRIEVLQPSKWWHWLKTTKAGKEEMRNLLWQLLIALKSCHDRNI THRDIKPENMVVCLEDQHTGRCLKGGPSGDKNYTVKMRIIDFGSAMDEFTLKHLYGSTGPSRAEQTSEYSPPEAFLNASWYHGPASTNLKYDMWSVGVVM LELILGTPNVFQISARTQALLDPHIVGWNEDLKELAYKLRAFMELCILIPGSSSKHHRSTGRVGDSPASWKCSEEFFSNQIKNRDPLKIGFPNVWALRLV RQLLLWDPEDRLSVDDALQHPYFQPPPKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63340			Protein phosphatase 2C family ...		Potri.005G214650 [exp]	0	1
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	1.41	0.8601
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Potri.002G096400 [exp]	4.47	0.8190
AT5G10630			Translation elongation factor ...		Potri.006G275500 [exp]	5.47	0.7969
					Potri.009G163001 [exp]	15.19	0.7587
AT4G14096			F-box/RNI-like superfamily pro...		Potri.013G151700 [exp]	15.49	0.7217
AT2G32235			unknown protein		Potri.018G147100 [exp]	20.19	0.8269
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.018G017000 [exp]	20.56	0.7975
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	25.45	0.7572
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Potri.014G094500 [exp]	37.14	0.7900
AT5G52545			unknown protein		Potri.004G079400 [exp]	38.47	0.7594

Compare expression of checked genes

Potri.005G214650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.