Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19840 580 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G20810 96 / 7e-21 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G06550 56 / 4e-08 unknown protein AT3G45880 50 / 2e-06 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G63080 48 / 1e-05 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047875 [exp] 172 / 4e-51 AT5G19840 54 / 8e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G016200 [exp] 96 / 3e-21 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.001G233200 [exp] 65 / 4e-11 AT3G45880 404 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G025400 [exp] 59 / 5e-09 AT3G45880 417 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G080400 [exp] 54 / 1e-07 AT5G63080 548 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G065400 [exp] 50 / 2e-06 AT5G06550 711 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000493 [exp] 689 / 0 AT5G19840 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10014697 [exp] 205 / 1e-61 AT5G19840 159 / 7e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10031247 [exp] 82 / 2e-16 AT3G20810 500 / 8e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10031818 [exp] 79 / 1e-15 AT3G20810 497 / 1e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10035699 [exp] 62 / 6e-10 AT3G45880 461 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016202 [exp] 54 / 2e-07 AT5G06550 724 / 0.0 unknown protein Lus10004294 [exp] 54 / 3e-07 ND / Lus10029343 [exp] 49 / 1e-05 AT5G06550 730 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF08007 [poplar] [flax] Cupin_4 Cupin superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.005G215200.1 pacid=42803488 polypeptide=Potri.005G215200.1.p locus=Potri.005G215200 ID=Potri.005G215200.1.v4.1 annot-version=v4.1 ATGGAAGAGTCTTTACAATTACAAATCCAAAGATTCGAAAAGCTCCCTTCTCCCACAGAATTCGCGTCTCAAATCGAATCCAAAAACGTCCCCGCTGTTT TTAATGGATGCATTAAGGACTGGAAAGCTTTCGTCAAGTGGAATCCGGCTAATGGCGGCCTCGATCACTTGCAGGAACGGGTAGGATCATCTACTGTGGA AGCTATGCTATCTAAAACTGCACCTGTGTTTTATGGCGATATTAGAAGCCATGAAAGGGTTCAGTTACCGTTTTCCACGTTTATTGATTTTTGCAAGCAA AGTATGCGAAACACGGACAGTAGTGGTGGTTCTTTGTTGCAATCAGAAAGGCATCATGATGCTGTTACTGATGTAGATCAGGAAAGTATGCTTTCCGGTG ATGTTCCTCAGCAAATTTATCTAGCACAGGTGCCGATAATGAATAGTGAGGATCGAGAGAGGGTTCAACTTGAAGGTCTTAGGGAAGACATTCAAACGCC TACTTTTTTGGAAACAAAAGAACTAGCTTCTATCAATTTGTGGATGAATAATGCTCAATCTAGATCAAGCACCCACTATGATCCACATCATAACGTGCTA TGTGTAGTTGCTGGCAGCAAACAAGTTGTCTTATGGCCGCCCTCTGCAAGTCCATTTTTATACCCAATGCCTGTATATGGGGAGGCATCAAACCACAGTT CTATTGCTCTGGAAAACCCTGACTTCTCATTGTATCCGAGAGCAAAATGCTCCATGGACTACTCTCAGAAGGTTATTCTTCATGCAGGTGATGCCCTTTT CATTCCTGAAGGCTGGTTCCACCAAGTAGACAGTGATGATTTGACCATTGCTGTGAACTTTTGGTGGCGGTCCAACATAATGTCTAACATGTTAGAACAC ATGGATGCTTATTATTTGCGAAGAATATTAAGAAGATTGATGGACAAAGAAATGAACCAAGTACTCCCCAAGGCTTCTCACAGCACAGAGAAACTGAAGA GTACATGTGAGCTGCCCAGTAATGGAGCAGATCATGGTTGTTGTGACTTGAACCCGGCATGCAAGAAACAGGGTTTACAAGGGAAGGACCTTAAGTTGCA TGAATTGGAACCGTTTTCTCTCCAGGCCCTTCATGAACTTGTTTCTGTAGTTCATGACCGTGTTAACATCACCGACCAAAGTCAATGCATTCAATCAACT CCACCAAATGATTCTAAAGTCAGTGTGAAACATGAATGCGATAAAACTTTGACAAGTAAATTATTTTTCCTAGAGGATGATCCAGTTGCTAAAATTCTTT GGACCTTTGATCCAAGCACTCTTCAGAATGTCCTCCTTGCCATGGCGCACAATTTTCCAAGAACCCTGGAGGCTCTGATGCTGCACTTGCTTTCACCAGT AGGAGCAGAGGTACTTACAAGGAAGTTTGATGAGGTTGATCAACATACAACAGAAGATGATCGGAACAAATTCTACCAAGGCTTTTATGGTGCATTTGAT GACCAATTTGCTGCAATGGATGCAATCCTTAATGGAAAGGAATTGTTTGCTCTCCAGGCATTCAAAGATTCTCTGGATAAATTCTTGGGAGTGAACATTG ACGTTCCCAAACCATCAATTAGATGA
AA sequence Show only first row Show all	>Potri.005G215200.1 pacid=42803488 polypeptide=Potri.005G215200.1.p locus=Potri.005G215200 ID=Potri.005G215200.1.v4.1 annot-version=v4.1 MEESLQLQIQRFEKLPSPTEFASQIESKNVPAVFNGCIKDWKAFVKWNPANGGLDHLQERVGSSTVEAMLSKTAPVFYGDIRSHERVQLPFSTFIDFCKQ SMRNTDSSGGSLLQSERHHDAVTDVDQESMLSGDVPQQIYLAQVPIMNSEDRERVQLEGLREDIQTPTFLETKELASINLWMNNAQSRSSTHYDPHHNVL CVVAGSKQVVLWPPSASPFLYPMPVYGEASNHSSIALENPDFSLYPRAKCSMDYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRSNIMSNMLEH MDAYYLRRILRRLMDKEMNQVLPKASHSTEKLKSTCELPSNGADHGCCDLNPACKKQGLQGKDLKLHELEPFSLQALHELVSVVHDRVNITDQSQCIQST PPNDSKVSVKHECDKTLTSKLFFLEDDPVAKILWTFDPSTLQNVLLAMAHNFPRTLEALMLHLLSPVGAEVLTRKFDEVDQHTTEDDRNKFYQGFYGAFD DQFAAMDAILNGKELFALQAFKDSLDKFLGVNIDVPKPSIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.005G215200 [exp]	0	1
AT1G74580			Pentatricopeptide repeat (PPR)...		Potri.010G234500 [exp]	1.00	0.8599
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.008G122901 [exp]	2.44	0.8291
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	4.00	0.8084
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.011G120000 [exp]	4.24	0.7731	NTR1.4
AT5G28350			Quinoprotein amine dehydrogena...		Potri.002G162000 [exp]	4.47	0.7513
AT5G44090			Calcium-binding EF-hand family...		Potri.005G227100 [exp]	5.91	0.7576
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.009G162600 [exp]	7.74	0.7913
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128800 [exp]	10.39	0.7118
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	14.96	0.7568
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	15.87	0.7549

Compare expression of checked genes

Potri.005G215200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.