Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63370 920 / 0 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 616 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 595 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 587 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 570 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 567 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 557 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G11290 543 / 2e-180 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 540 / 5e-179 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 530 / 8e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 662 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 622 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 615 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 600 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 586 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 580 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 578 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 570 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 560 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004081 [exp] 1268 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 1267 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 622 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 612 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 609 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 606 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 598 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 597 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 574 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 558 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.005G215500.2 pacid=42803333 polypeptide=Potri.005G215500.2.p locus=Potri.005G215500 ID=Potri.005G215500.2.v4.1 annot-version=v4.1 ATGGCTACGTCAATTTCACAATGCTATTACAATATCCCTAAAACCTTTGCCCAACTCCAAACGTTAAACAAAACCCATGTAGCGAACCCGTCTCTCAAAA TCCCTAAATTCTCTCAGAAGATAAAAAACTCCCCTCTTAAAGAGACATGCAACCAAGGAAGCCTCAAAGAAGCTTTTGTCTCATTTTCTGCTCTTTTCAC TGACTGTGGCAACTCACTTCTGATTAACCCTGACGAGGTTTATGCACCAATCCTTGAGCTTTGTGCAACCAAGAGAGCACTTTTACAGGGCCAACAAATT CATGCCCATTTAATAAAATCCAATTTAGTATCTGAATTTATGTTTTTGAGCGCAAAACTTGTTTATATGTATGGCAAGTGTGGGTCTATTTTGGATGCGG ACAAAGTGTTTGATAAAATGCACGACAGAACTATTTTTACATGGAATGCTATGATGGGTGCTAATGTATCAAACGGAGAACCTTTAAGAGCCCTTGAATT GTTTAGGGAAATGCGGGTTTTGGGTGTTCCCTTTGATTCTTTTACTTTTCCGTGTGTACTTAAAGCGTGCGGTGTGGTTGAGGATATACACCGCGGGGCT GAAATTCATGGTCTGATAATTAAATGTGGATATGATTCTATTGTGTTTGTTGCTAATTCTCTTGTTTCCATGTATGCCAAGTGCAATGACATACTCGGAG CAAGGAAACTGTTCGATAGAATGAATGAAAGAAATGATGTCGTGTCATGGAATTCTATAATTTCAGCCTACTCTTTGAATGGGCAATGTATGGAGGCATT GGGATTGTTTAGGGAAATGCAGAAGGCTGGTGTTGGTGCAAATACTTATACTTTGGTTGCTGCTCTTCAAGCTTGTGAGGATTCTTCCTTCAAGAAACTG GGCATGGAGATTCATGCTGCTATTTTAAAATCAAATCAAGTACTTGATGTTTATGTGGCCAATGCTTTGGTAGCTATGCATGTTAGATTTGGTAAAATGA GTTATGCTGCTAGAATTTTTGACGAGTTGGATGAGAAGGATAACATCACTTGGAATTCCATGATAGCAGGTTTCACTCAAAATGGTTTGTATAATGAAGC TTTGCAATTCTTCTGTGGTTTGCAAGATGCTAATCTAAAACCAGATGAGGTTTCTCTAATAAGCATCCTTGCTGCGTCTGGGAGACTGGGTTATCTGTTG AATGGAAAGGAAATTCATGCTTACGCAATGAAGAATTGGCTCGATTCTAATCTACGGATTGGAAATACACTTATAGATATGTATTCCAAGTGCTGTTGTG TGGCTTACGCTGGCCTAGTTTTTGATAAGATGATCAATAAAGATCTCATTTCCTGGACAACAGTTATAGCTGCCTATGCTCAAAATAATTGTCATACTGA GGCTTTAAAATTGCTGAGGAAAGTGCAGACGAAAGGGATGGACGTAGATACAATGATGATAGGAAGCACCTTGCTGGCTTGCAGTGGATTGAGATGCTTG TCCCATGCAAAAGAAGTTCATGGTTACACTTTGAAGCGAGGTTTATCTGATCTTATGATGCAGAATATGATCATTGATGTGTATGCAGATTGTGGGAATA TTAATTATGCAACTCGAATGTTCGAGTCAATAAAATGTAAAGATGTGGTGTCTTGGACGAGCATGATATCGTGCTATGTACATAATGGACTTGCAAATGA AGCACTCGGTGTTTTTTACCTGATGAAAGAAACCAGTGTTGAACCTGATTCTATAACTCTAGTAAGCATCCTCTCTGCTGCTGCTAGTTTATCTGCCTTG AATAAAGGAAAAGAAATTCATGGTTTCATATTCCGGAAGGGTTTCATGTTAGAAGGATCTACAGTGAACTCTCTAGTCGATATGTATGCTTGTTGTGGAA GTCTGGAGAATGCATACAAGGTATTTATTTGCACCAGAAGTAAAAGTCTAGTTCTATGGACAACTATGATCAACGCATATGGAATGCATGGACGTGGCAA AGCAGCTGTTGAATTATTTAGTATAATGGAGGACCAGAAACTAATTCCCGATCATATTACCTTTTTGGCACTTCTTTATGCATGCAGTCATTCAGGACTA ATCAATGAAGGTAAAAGATTGCTTGAAACTATGAAATGTAAGTATCAGCTGGAGCCATGGCCAGAACATTATGCATGTTTGGTTGATCTTCTTGGCCGTG CAAATCACTTAGAAGAGGCATACCATTTTGTGAAAAGCATGCAGATTGAGCCTACTGCTGAAGTTTGGTGTGCATTCCTCGGGGCTTGTCGGATTCACTC AAATAAAAAACTTGGAGAAATTGCAGCACAAAAGCTTTTAGACTTGGATCCAGATAGTCCAGGAAGTTACGTGCTGATATCCAATGTCTTTGCTGCCAGT GGTAGATGGAAAGACGTGGAAGAAGTAAGAATGAGAATGAAGGGGGGTGGGTTGAAGAAAAACCCTGGGTGCAGTTGGATTGAGGTTGGGAACAAGGTTC ATACATTCCTTGTAAGAGACAAGTCTCACCCAGAATCTTACAAGATTTATCAAAAGTTGGCTCAAATTACTGAGAAGTTGGAGAAGGAAGGAGGCTATGT GCCTCAAACGAAGCTTGTTTTGCACAATGTAGGGAAAGAAGAGAAAGTTCAGATGCTTTATGGACATAGTGAAAGGCTGGCAATTGCATATGGTCTGATG AGCACTTCTGAGGGAACCCCTATTAGAATTACAAAGAACCTTCGAGTTTGTGTTGATTGCCATACGTTTTGTAAGCTGGTTTCAAAATTCTTTGAAAGAG AACTGATTGTGAGGGATGCCAGCCGATTTCATCATTTTGAAGACGGAGTCTGCTCTTGCGGTGATTTCTGGTGA
AA sequence Show only first row Show all	>Potri.005G215500.2 pacid=42803333 polypeptide=Potri.005G215500.2.p locus=Potri.005G215500 ID=Potri.005G215500.2.v4.1 annot-version=v4.1 MATSISQCYYNIPKTFAQLQTLNKTHVANPSLKIPKFSQKIKNSPLKETCNQGSLKEAFVSFSALFTDCGNSLLINPDEVYAPILELCATKRALLQGQQI HAHLIKSNLVSEFMFLSAKLVYMYGKCGSILDADKVFDKMHDRTIFTWNAMMGANVSNGEPLRALELFREMRVLGVPFDSFTFPCVLKACGVVEDIHRGA EIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKL GMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLL NGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCL SHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSAL NKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGL INEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAAS GRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLM STSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G215500 [exp]	0	1
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	2.23	0.8826
					Potri.001G247100 [exp]	6.70	0.8169
AT1G13030			sphere organelles protein-rela...		Potri.010G048700 [exp]	8.00	0.7465
AT4G12750			Homeodomain-like transcription...		Potri.014G173300 [exp]	13.96	0.8280
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	14.62	0.8361
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.006G035000 [exp]	20.19	0.7868	Pt-CIP111.1
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	21.35	0.7833
AT2G31340		EMB1381	embryo defective 1381 (.1)		Potri.002G224300 [exp]	23.36	0.7944
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.018G036500 [exp]	24.33	0.7723
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	25.45	0.8060

Compare expression of checked genes

Potri.005G215500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.