Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22930 200 / 9e-67 CML11 calmodulin-like 11 (.1) AT4G14640 195 / 5e-65 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT5G37780 194 / 1e-64 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 194 / 1e-64 ACAM-4, CAM4 calmodulin 4 (.1.2) AT3G43810 192 / 4e-64 CAM7 calmodulin 7 (.1) AT2G41110 192 / 1e-63 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 192 / 1e-63 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 192 / 1e-63 ACAM-3, CAM3 calmodulin 3 (.1) AT5G21274 191 / 1e-63 ACAM-6, CAM6 calmodulin 6 (.1) AT3G51920 162 / 4e-52 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047300 [exp] 251 / 2e-86 AT3G22930 171 / 3e-54 calmodulin-like 11 (.1) Potri.010G080900 [exp] 209 / 1e-70 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 208 / 4e-70 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.005G052800 [exp] 208 / 4e-70 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.012G041000 [exp] 196 / 2e-65 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600 [exp] 194 / 8e-65 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 194 / 3e-64 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.016G024700 [exp] 192 / 4e-64 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 192 / 4e-64 AT3G43810 300 / 2e-106 calmodulin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039391 [exp] 204 / 3e-68 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10041288 [exp] 192 / 5e-64 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 192 / 5e-64 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 192 / 5e-64 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 192 / 5e-64 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10024830 [exp] 191 / 4e-63 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10014708 [exp] 187 / 6e-62 AT4G14640 163 / 2e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10014709 [exp] 187 / 9e-62 AT4G14640 162 / 4e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10004088 [exp] 183 / 3e-60 AT4G14640 159 / 5e-51 calmodulin-like 8, calmodulin 8 (.1) Lus10009176 [exp] 174 / 2e-56 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.005G215700.1 pacid=42803618 polypeptide=Potri.005G215700.1.p locus=Potri.005G215700 ID=Potri.005G215700.1.v4.1 annot-version=v4.1 ATGGCAGATTCTCTGACAGAAGAACAGGTTGCTGAGTTCCGAGAGGCCTTTTGCTTGATCGACAAGGACGCAGATGGTTTCATTACAATGGAAGAACTGG CAACCATTGTCCAGTCATTGGATAGACGTCCTACGAAAGAAGAAATTCAAGACATGATATGTGACGTTGATCTTGATGGAAATGGGACATTGGATTTTGA AGAGTTCTTGAATATCATGGGAAGGAAGCAGAAGGAAAATGTCACTGAGGAATTAAAAGAAGCTTTCAAAGTTTTTGATAGGAACCAAGACGGATATATT TCGGCCAATGAGCTAAGACAAGTGATGATAAATTTGGGAGAGAGACTGACGGAGGAAGAGGCTGAACAAATGATAAGAGAGGCTGACGTGGACGGTGATG GTCTAGTTAGTTACGAGGAATTTGCAAGGATGATGATGGTTGCTTTCTGA
AA sequence Show only first row Show all	>Potri.005G215700.1 pacid=42803618 polypeptide=Potri.005G215700.1.p locus=Potri.005G215700 ID=Potri.005G215700.1.v4.1 annot-version=v4.1 MADSLTEEQVAEFREAFCLIDKDADGFITMEELATIVQSLDRRPTKEEIQDMICDVDLDGNGTLDFEEFLNIMGRKQKENVTEELKEAFKVFDRNQDGYI SANELRQVMINLGERLTEEEAEQMIREADVDGDGLVSYEEFARMMMVAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.005G215700 [exp]	0	1
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.015G045300 [exp]	1.41	0.9877
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.001G080900 [exp]	2.23	0.9791
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	2.44	0.9809
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.012G054900 [exp]	4.24	0.9811	CBP60.6
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171300 [exp]	6.48	0.9492
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.011G007800 [exp]	10.48	0.9675	Pt-WRKY42.1
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Potri.013G090400 [exp]	12.00	0.9724
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091500 [exp]	12.12	0.9608
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.016G003000 [exp]	13.96	0.9663
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211366 [exp]	14.96	0.9542

Compare expression of checked genes

Potri.005G215700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.