Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT4G34870 197 / 2e-59 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G21130 196 / 7e-59 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 195 / 2e-58 ROC3 rotamase CYP 3 (.1.2) AT4G38740 194 / 2e-58 ROC1 rotamase CYP 1 (.1) AT3G56070 185 / 7e-55 ROC2 rotamase cyclophilin 2 (.1.2) AT2G29960 177 / 2e-51 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 177 / 2e-51 ROC7 rotamase CYP 7 (.1) AT2G15790 179 / 4e-50 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G55920 174 / 4e-50 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047200 [exp] 332 / 3e-104 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.009G130100 [exp] 209 / 5e-64 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G240200 [exp] 207 / 4e-63 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.004G168800 [exp] 204 / 4e-62 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 202 / 3e-61 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.009G106200 [exp] 188 / 2e-53 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 187 / 3e-53 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G144300 [exp] 187 / 3e-53 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.019G014396 [exp] 177 / 8e-52 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024831 [exp] 270 / 6e-81 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 270 / 9e-81 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10007579 [exp] 204 / 3e-62 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 200 / 2e-60 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10017258 [exp] 192 / 2e-57 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10013552 [exp] 184 / 1e-54 AT2G16600 297 / 1e-104 rotamase CYP 3 (.1.2) Lus10020992 [exp] 186 / 7e-53 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10013111 [exp] 193 / 4e-52 AT3G63400 288 / 5e-85 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018238 [exp] 178 / 7e-52 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 178 / 7e-52 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.005G215800.4 pacid=42805661 polypeptide=Potri.005G215800.4.p locus=Potri.005G215800 ID=Potri.005G215800.4.v4.1 annot-version=v4.1 ATGAGCAAGAAGAAGAATCCTCTCGTATTCTTAGATGTGTCCATCGACGGAGATCCTGCCGAAAGGATTTTTATCGAGCTTTTCGCAGATGTTGTCCCCA GGACTGCCGAGAATTTTCGGGCACTCTGTACAGGTGAAAAGGGTACTGGAAAAACCACTGGGAAACCTCTGCACTACAAGGGCTCTTCTTTCCATCGAAT AATCAAAGAATTCATGGCCCAAGGTGGTGACTTTTCGAAGGGAAATGGCACTGGTGGAGAAAGCATCTATGGAGGGAAGTTTGCAGATGAGAATTTTATA CAGAGGCATGAAGGAGCAGGTCATCTCTCTATGGCAAATAGCGGTCCAAACACAAATGGTTCCCAATTCTTCATAACATTAAAGCCTCAGGCCCATCTTG ATGGGAAACATGTTGTCTTTGGAAAGGTGGTTAAGGGAATGGACATTGTGAAGAAAATTGAACAGGTGGGAAGTGCCCGTGGCCAACCTGCCAGACCTGT AAAAATTGTGGATTGTGGTGAAACTTCTGAAAGTAAAATTGAGGATGCTGTTGGGAAAGATACAGGAAAGAATAAGAAAGCTGGGAAGCCTTCAGATGAT GGTCCAAATGTTCAAGTTAGAGGAAGAAGTAAAAAATCCCTGAAGGATACAAGGAAGAAAAGAAAAAGGAGATACTCTTCATCCGATTCAGATTCATCTT CATCTGATTCTGAAACATCATCTTCAGAATCAGATTCTGATTCAAGTTCATCTAGTGATGGAAGGCATAAGAAAAGGAGGAGGTCAGCAAAAAGAGGTAA GTACCATGGGAGAAAACAGAAGAATGGACGAAGGGAGAGGAAGAGAGGGCGAAGTGATAAACGATCAAGGCGGAAATCTAAATGGAGTTCTGAGAGCTCA AGTGATACAGAGACTGATAGTTCTAGCACTACCAGCACATCTGATGATAGAAGTCCTGTTGCTGCTCATAAGACCAGTAACTCAACTCAGGCTGGAAAGA AATCAATTCAGAGTTCTGGTGCAAGTGGAAAATCCCTGTCCCATCTCTCCAAGAAAGAAGCTGTGGTGGAACAACACCAAAGGAATCAAAAGCCCATGAA AGCTGCGGGCAGCTCGCCACATGAAGAAGGTGAATTGTCTCCCAGGAATGACGAACATCTAAATAATGGGCATGGGATGGATTCTAAATCGGGCGCAACT CATAATCAGCATCCCCATTCAGATAACTCAAACAAATCCAGGAGAGCAATGCCAAGCTCCAAAAGTAGGCCAAACAATACCTGCAGGAGCAGTCCTAGCA TGAGTCCTGAAGAAGTTTCCAGGAGTCCAAGATTCAGAACTGACAGTAGAAGTCCAGTTAGGAAGTCTGGGGAGCTGAGCCAGGGAAGGTCATCAAGGAG TCCACTGGGTAGTCCTGCCAACAAAGGCCACCATGAACCTTCTATGTCAAACCAGAGTCAATCCCCAAATGGTGCCCCCACGCGCATTAGAAAAGGGCGT GGTTTCACCGATCGTTATGCATTTGCACGTCGGTATCGCACCCCGTCTCCCGAACGATCCCCTCGGAGGTCCTACCGTTATGGAGGAAGAAATATCAATG GGAGGAACCGTGATAGGCTGCCAAGCTACAGAAGTTATTCTGAGCGCTCTCCACCAAGACGATATATAAGTTCACCAAGAGGCAGGAGTCCCCCTAGGTA TGGAAGGCAGAGAAGTAGAAGCAGGAGTCCACGACGAAGTCCTACACCTGGTGATAAGCGACCTTCCATAAGCGAGGGTTTGAAATCTCGATTAGGTCCT CGAGTTGATGATAAGCCATTTCCTAACAAAGGAAGACTGAGATCCAGGTCCAGTTCCAGGTCTAGCAGCCGTGGATCTTCTCATTCTAGATCTCCCGATG CTGTTCCACCAAAACGTCAAGGCATAGCAGCTAGAGCTAGCATGTCTCCATCAAGCTCACCGTCTGAACAGCAAGCTTTAGTTTCCTACGGGGATGCTAG TCCTGATACTGAAATGAGGTAG
AA sequence Show only first row Show all	>Potri.005G215800.4 pacid=42805661 polypeptide=Potri.005G215800.4.p locus=Potri.005G215800 ID=Potri.005G215800.4.v4.1 annot-version=v4.1 MSKKKNPLVFLDVSIDGDPAERIFIELFADVVPRTAENFRALCTGEKGTGKTTGKPLHYKGSSFHRIIKEFMAQGGDFSKGNGTGGESIYGGKFADENFI QRHEGAGHLSMANSGPNTNGSQFFITLKPQAHLDGKHVVFGKVVKGMDIVKKIEQVGSARGQPARPVKIVDCGETSESKIEDAVGKDTGKNKKAGKPSDD GPNVQVRGRSKKSLKDTRKKRKRRYSSSDSDSSSSDSETSSSESDSDSSSSSDGRHKKRRRSAKRGKYHGRKQKNGRRERKRGRSDKRSRRKSKWSSESS SDTETDSSSTTSTSDDRSPVAAHKTSNSTQAGKKSIQSSGASGKSLSHLSKKEAVVEQHQRNQKPMKAAGSSPHEEGELSPRNDEHLNNGHGMDSKSGAT HNQHPHSDNSNKSRRAMPSSKSRPNNTCRSSPSMSPEEVSRSPRFRTDSRSPVRKSGELSQGRSSRSPLGSPANKGHHEPSMSNQSQSPNGAPTRIRKGR GFTDRYAFARRYRTPSPERSPRRSYRYGGRNINGRNRDRLPSYRSYSERSPPRRYISSPRGRSPPRYGRQRSRSRSPRRSPTPGDKRPSISEGLKSRLGP RVDDKPFPNKGRLRSRSSSRSSSRGSSHSRSPDAVPPKRQGIAARASMSPSSSPSEQQALVSYGDASPDTEMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.005G215800 [exp]	0	1
AT1G06720			P-loop containing nucleoside t...		Potri.017G017700 [exp]	3.60	0.8148
AT3G16840			P-loop containing nucleoside t...		Potri.010G063600 [exp]	4.24	0.7789
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.005G021400 [exp]	4.89	0.7621
AT5G46070			Guanylate-binding family prote...		Potri.011G058500 [exp]	6.70	0.7621
AT4G31520			SDA1 family protein (.1)		Potri.008G182900 [exp]	18.49	0.7706
AT3G16810		APUM24	pumilio 24 (.1)		Potri.008G211400 [exp]	20.12	0.7437
AT1G69070			unknown protein		Potri.010G140100 [exp]	23.32	0.7124
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	23.49	0.7596
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Potri.009G120900 [exp]	23.49	0.7467
AT1G79150			binding (.1)		Potri.005G096900 [exp]	24.67	0.7512

Compare expression of checked genes

Potri.005G215800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.