Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) AT4G32440 95 / 6e-22 Plant Tudor-like RNA-binding protein (.1.2.3) AT2G25590 84 / 9e-18 Plant Tudor-like protein (.1) AT1G06340 61 / 3e-11 Plant Tudor-like protein (.1) AT3G12140 52 / 4e-07 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G13020 50 / 2e-06 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 50 / 2e-06 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT1G09320 47 / 2e-05 agenet domain-containing protein (.1) AT1G68580 47 / 2e-05 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT5G06780 45 / 4e-05 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046800 [exp] 619 / 0 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.006G250600 [exp] 167 / 7e-48 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.001G173900 [exp] 145 / 9e-40 AT4G32440 208 / 2e-63 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 98 / 3e-22 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.013G006900 [exp] 61 / 5e-10 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.005G011100 [exp] 59 / 2e-09 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.T070080 [exp] 52 / 3e-07 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 52 / 3e-07 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 52 / 3e-07 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003091 [exp] 250 / 1e-80 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10018749 [exp] 248 / 7e-80 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10014715 [exp] 248 / 7e-80 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10024835 [exp] 238 / 4e-76 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10037805 [exp] 57 / 1e-08 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10000353 [exp] 54 / 1e-07 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 54 / 2e-07 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10031799 [exp] 53 / 3e-07 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031223 [exp] 51 / 8e-07 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10010903 [exp] 51 / 9e-07 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [poplar] [flax] ENT ENT domain CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.005G216200.1 pacid=42804827 polypeptide=Potri.005G216200.1.p locus=Potri.005G216200 ID=Potri.005G216200.1.v4.1 annot-version=v4.1 ATGAAGTTTAAAGAAGGGAATTTGGTGGAGGTTTTAAGAAGAGACCATGAGCCATGTGGTTCGTGGTTTCCCGGAAGTGTAGTTTCGGCCCGTGGCAATT ATTGTAAAATTAGGTACAAATCAGTTTCGGACAACAAGGGAGAGCCAGTTATGGAGAAGGTGCGTGAGGAGGATGTCAGGCCTCAGCCCCCTCATAAAAA AAGGAAAAGATGGATGGTTGGTGATGTTGCTGAGATATTTGATTTTCAATGCTGGAGAGAAGGAAAAATTGCAAAGGTGTTGAATAATAACCTCTTTGTT GTGAGGCTGTTCGGGTCCATCCAACTCAAAGAATTTCATGAATCGAGCATAAGGATTCAGCAGGCCTGGCATAATAATAATTGGTCGGTGATAGGAAAGG TTACTCAAAATATAGAACACTCCAAAAAATGTGCAGAAAATAAGTCAAAGCATTCTGGTAGCTTGGTGCGAAGGGCTCTGGTACCAGTGACGAGGAAAGA TCCATGCTTACTAGAGAAAGATGGACAAAAACACCTTAAAGATGGACAGCATAATGTCAAAATGGGTCTTGACCAGCATCATCTTGAAAGATCTTCAAAG GACCTGGTTTCTTGTATGGAAGGATGCCACAAGCAACTTGTACGGAATCTTCCTTTTTTTAAGCGGGCAGACAACATTTCTTCTGAAAAATTAATAGCGG ATGAGAAATTTAAGGGATCTAGTGAGATGAATGCCAACATGGTAAAAGCAACTACTTATACTTCTTCCAGGCCTCTTTTGACTGCAGATAGCAACCAAAG TTCTGTTGCTAGCTGCAGTTCTAATGGCTTCGCCGACTCCTCCAGTCATAATTTCCAAACACCATTGGATAATGCATCCCATAGGTCAGATGCCGAGTCA TCATTTGTTTCCTTTTCTTTCATCAAGCGTTTAACTCCTTATTTTGAACAAAAGCTAGAAGCTGAAATCCATGAGCTAGAGTTTCATGCTTATCGGTCAA CTGTGCAGGCATTATATGCCTCAGGTCCCTTAAGTTGGGAGCAAGAGTCACTCCTAACAAATCTTCGCCTATCCCTTCACATTTCAGACGAGGAACATCT TCTCCATCTGAGGCAACTATTGTCCACTCAGGTCCTGTAA
AA sequence Show only first row Show all	>Potri.005G216200.1 pacid=42804827 polypeptide=Potri.005G216200.1.p locus=Potri.005G216200 ID=Potri.005G216200.1.v4.1 annot-version=v4.1 MKFKEGNLVEVLRRDHEPCGSWFPGSVVSARGNYCKIRYKSVSDNKGEPVMEKVREEDVRPQPPHKKRKRWMVGDVAEIFDFQCWREGKIAKVLNNNLFV VRLFGSIQLKEFHESSIRIQQAWHNNNWSVIGKVTQNIEHSKKCAENKSKHSGSLVRRALVPVTRKDPCLLEKDGQKHLKDGQHNVKMGLDQHHLERSSK DLVSCMEGCHKQLVRNLPFFKRADNISSEKLIADEKFKGSSEMNANMVKATTYTSSRPLLTADSNQSSVASCSSNGFADSSSHNFQTPLDNASHRSDAES SFVSFSFIKRLTPYFEQKLEAEIHELEFHAYRSTVQALYASGPLSWEQESLLTNLRLSLHISDEEHLLHLRQLLSTQVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20030			Plant Tudor-like RNA-binding p...		Potri.005G216200 [exp]	0	1
AT4G29790			unknown protein		Potri.006G146700 [exp]	1.73	0.8855
AT1G73980			Phosphoribulokinase / Uridine ...		Potri.015G055400 [exp]	4.24	0.8485
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.013G008300 [exp]	5.83	0.8628
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.011G123500 [exp]	6.00	0.8219	NAC003,ATNAC2.1
AT5G58900	MYB		Homeodomain-like transcription...		Potri.001G248800 [exp]	6.32	0.8320
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Potri.001G374100 [exp]	9.59	0.8188
AT2G15695			Protein of unknown function DU...		Potri.009G103500 [exp]	10.24	0.8268
AT1G15290			Tetratricopeptide repeat (TPR)...		Potri.003G031000 [exp]	13.41	0.7906
AT4G02715			unknown protein		Potri.005G211400 [exp]	16.09	0.8346
AT3G55760			unknown protein		Potri.008G159500 [exp]	17.20	0.8022

Compare expression of checked genes

Potri.005G216200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.