Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22960 63 / 2e-12 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G159700 [exp] 65 / 6e-13 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G080700 [exp] 65 / 7e-13 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 48 / 6e-07 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 48 / 6e-07 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039396 [exp] 67 / 1e-13 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 65 / 8e-13 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 50 / 7e-08 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 47 / 1e-06 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02887 [poplar] [flax] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Potri.005G216750.1 pacid=42803238 polypeptide=Potri.005G216750.1.p locus=Potri.005G216750 ID=Potri.005G216750.1.v4.1 annot-version=v4.1 ATGTCACGAGAAGACATTAACATCAGTTTTCTCATCTTAAAGTCCTGTTTCTACAACTCATCATTGATCTCATTGGTGCTTCATAGAGATCTTCCAGGAT TTTTTTTTTTCCTGTATGTATTTGTTCCTGCGAGTCATGCTAAACCGTTGAAATTTTTCTCTTTGTTGATAACAAGGCAATCTTTTTTGGAATTTCAGAT ACCCCCAAATTGGAAGACGATGCATTTTTGGTTTTATATGGAAAATGGGCAAGTGGCATCTCTTCTCTCCCGTTCTCGTCCTGACCTCCCAATCCTTGCA TTTACATCGTCATTTTCTGTGCACAGGCGCTTTAACTTGCAGGGGGGTTTGATACCATTCTACCTTCTCTCTTTTTTTCCCTGTGATGTCAAGGCAAGCA ATCTAAAAGGAACTTTTTTGGCTTCTTAA
AA sequence Show only first row Show all	>Potri.005G216750.1 pacid=42803238 polypeptide=Potri.005G216750.1.p locus=Potri.005G216750 ID=Potri.005G216750.1.v4.1 annot-version=v4.1 MSREDINISFLILKSCFYNSSLISLVLHRDLPGFFFFLYVFVPASHAKPLKFFSLLITRQSFLEFQIPPNWKTMHFWFYMENGQVASLLSRSRPDLPILA FTSSFSVHRRFNLQGGLIPFYLLSFFPCDVKASNLKGTFLAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.005G216750 [exp]	0	1
AT2G21260			NAD(P)-linked oxidoreductase s...		Potri.014G144700 [exp]	1.41	0.7228	Pt-S6PDH.1
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073100 [exp]	16.58	0.6198
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Potri.003G121900 [exp]	26.90	0.6471
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Potri.013G156700 [exp]	28.63	0.6098
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G019900 [exp]	31.85	0.5781
					Potri.002G038350 [exp]	38.78	0.6158
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	48.40	0.5839
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.001G356900 [exp]	83.13	0.5292	SOYAP4.1
AT4G39870			TLD-domain containing nucleola...		Potri.007G092700 [exp]	85.07	0.5415
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.009G165700 [exp]	97.85	0.5358

Compare expression of checked genes

Potri.005G216750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.