Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04220 500 / 2e-174 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT5G43760 492 / 2e-171 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT2G26640 476 / 2e-165 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT4G34510 461 / 1e-159 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G19440 453 / 3e-156 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 453 / 4e-156 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT2G15090 446 / 6e-154 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT1G01120 443 / 4e-152 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34250 436 / 1e-149 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT1G25450 435 / 2e-149 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160000 [exp] 510 / 1e-178 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 503 / 1e-175 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 501 / 6e-175 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 496 / 4e-173 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 493 / 9e-172 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 483 / 4e-168 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 482 / 1e-167 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 481 / 2e-167 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 479 / 3e-166 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006637 [exp] 481 / 1e-166 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041177 [exp] 479 / 4e-166 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10039399 [exp] 472 / 1e-163 AT1G04220 689 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10019446 [exp] 471 / 4e-163 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10006636 [exp] 469 / 6e-163 AT1G04220 618 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10012611 [exp] 470 / 1e-162 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10043300 [exp] 469 / 1e-162 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10001657 [exp] 459 / 1e-158 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002533 [exp] 458 / 2e-158 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10010108 [exp] 458 / 4e-158 AT1G01120 868 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.005G217000.1 pacid=42805605 polypeptide=Potri.005G217000.1.p locus=Potri.005G217000 ID=Potri.005G217000.1.v4.1 annot-version=v4.1 ATGTTTAGAATCACCATAGCATCAAATGATCTTCCAAAGTTCATCGCCAACCGCCTTAGTCTCTTCACCAACTTCATTGCGCCAGTACTTCTCTGCTTAA CCTTGGCAATACTTCTGCTCTCAAAAATCTTCAAGTCAAAACCTTCACGGAAGGTTTTTTTATTAGATTTTGCATGTTACAAGCCTCCAGCCAGCCAAAT GTGGAGCAAAGAACTCACAATGGAAAGAGCCAGGCACCACTTCACCAACTTGTCAGAGGAAGCTTTACTGTTCATGGAAAAAATTCTGGAGAAATCAGGG ATTGGTCCGTCCACCTACTTGCCAGACGCATTTAGAAGCGAACAACCGAACGAATGCATGGAAGAGGTGAGGAAAGAGAGCGAGATGGTGATTTTTGGTG CTGTGGATGACATATTGGCAAAGACTGGAGTGAAGGGCGAGGATATAGGGATAGTGATAGTGAATTGTTGTATTTTTAATACGGTTCCATCTCTTTCTGC CATGATAATTAACAGGTACAAGCTAGGAGATAAGGTGGTCAGCTATAGTCTTAGCGGGATGGGTTGCAGTGCTGGGCTCGCAGCTATAGGCCTTGCCAAA CAGCTGCTCCAGGTACACAGAAATTCCTACGCTCTGGTGGTGAGCACAGAGAACATCACCGGAAACCGCTACCTGGGTAAGGATCGTTCTATGATCTTGA TCAACTGCCTATTCCGTGTTGGTGGGGCAGCCGTCCTCCTCTCAAACAAGCCATCGGATCGCCATGCTGCCAAGTATCAGCTCATCCACGCCGTCCATAC CAACACAGCTGCTTCTGACCTATCCTACAACTGCATTTCAAGTGCCGAAGACGCAGAAGGACTCGTGGGTGTCGCAATTACCAAGAGTCTCATGCCAGTA GCCATCAAGACCATTGAAGCCAACTTAACCACACTAGGCCACCTAGTCCTTCCCATATCAGAAAAGATCCTTTTCATCGCAAATTACATTGCTAGGCATT TCAACCTGGAAAAGATCAAACCGTACGTCCCTGATTTCATGAAGGCCATTGACCACATCGTCACTCACGTTGGTGGCCAACCTGTGCTCGATGAAGTGGA GAGAAGCCTGAAGTTAAGTAAAAATGATATGGAAGCTTCAAGAATGACTTTGTACAGGTTTGGCAACACTTCTTCTAGTTCAGTGTGGTATGGGCTGGCA TATACTGAGGCTAAGGGCAGGATTAAGAAAGGTGATCGTGTGTGGCAGATTGCATTTGGATCTGGGTTCAAGTGTAATAGTTTGATCATGAAAGCAATGA GGGATGTTGATCTTGAGGAAAAGAATCCTTGGAGTGATGAGATTGATGGGTTTCCCGTAGCCCTGATGAGCTCTGATGGGACCTTTCCATTTGATTTTAA ACCATCCAAATAG
AA sequence Show only first row Show all	>Potri.005G217000.1 pacid=42805605 polypeptide=Potri.005G217000.1.p locus=Potri.005G217000 ID=Potri.005G217000.1.v4.1 annot-version=v4.1 MFRITIASNDLPKFIANRLSLFTNFIAPVLLCLTLAILLLSKIFKSKPSRKVFLLDFACYKPPASQMWSKELTMERARHHFTNLSEEALLFMEKILEKSG IGPSTYLPDAFRSEQPNECMEEVRKESEMVIFGAVDDILAKTGVKGEDIGIVIVNCCIFNTVPSLSAMIINRYKLGDKVVSYSLSGMGCSAGLAAIGLAK QLLQVHRNSYALVVSTENITGNRYLGKDRSMILINCLFRVGGAAVLLSNKPSDRHAAKYQLIHAVHTNTAASDLSYNCISSAEDAEGLVGVAITKSLMPV AIKTIEANLTTLGHLVLPISEKILFIANYIARHFNLEKIKPYVPDFMKAIDHIVTHVGGQPVLDEVERSLKLSKNDMEASRMTLYRFGNTSSSSVWYGLA YTEAKGRIKKGDRVWQIAFGSGFKCNSLIMKAMRDVDLEEKNPWSDEIDGFPVALMSSDGTFPFDFKPSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Potri.005G217000 [exp]	0	1
AT5G39130			RmlC-like cupins superfamily p...		Potri.011G163800 [exp]	3.60	0.8424	GER2.27
AT3G05950			RmlC-like cupins superfamily p...		Potri.011G163200 [exp]	10.72	0.8145	Pt-GER2.29
AT4G34040			RING/U-box superfamily protein...		Potri.007G045500 [exp]	25.69	0.7586
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.019G062000 [exp]	45.55	0.7771
AT3G05950			RmlC-like cupins superfamily p...		Potri.011G162932 [exp]	67.81	0.7562
AT1G19110			inter-alpha-trypsin inhibitor ...		Potri.003G068000 [exp]	80.28	0.7798
AT3G55640			Mitochondrial substrate carrie...		Potri.008G060900 [exp]	83.96	0.7739
					Potri.006G055500 [exp]	106.13	0.7355
AT1G04360			RING/U-box superfamily protein...		Potri.008G165900 [exp]	106.37	0.7237
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.009G078400 [exp]	113.04	0.7399	UF3.3

Compare expression of checked genes

Potri.005G217000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.