Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38840 960 / 0 Guanylate-binding family protein (.1) AT5G46070 130 / 2e-31 Guanylate-binding family protein (.1) AT1G03830 70 / 4e-12 guanylate-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046000 [exp] 1089 / 0 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.011G058500 [exp] 133 / 2e-32 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1) Potri.004G049400 [exp] 132 / 8e-32 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1) Potri.017G016800 [exp] 130 / 3e-31 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.012G117034 [exp] 42 / 0.0001 AT5G45160 142 / 1e-40 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.015G112700 [exp] 43 / 0.0008 AT5G45160 1161 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018755 [exp] 988 / 0 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10024841 [exp] 981 / 0 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10014720 [exp] 958 / 0 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10003084 [exp] 651 / 0 AT2G38840 650 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 296 / 2e-97 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1) Lus10015390 [exp] 140 / 2e-34 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 136 / 3e-33 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10025456 [exp] 131 / 1e-31 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1) Lus10015327 [exp] 130 / 3e-31 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10018638 [exp] 71 / 2e-12 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02841 [poplar] [flax] GBP_C Guanylate-binding protein, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G217300.3 pacid=42805281 polypeptide=Potri.005G217300.3.p locus=Potri.005G217300 ID=Potri.005G217300.3.v4.1 annot-version=v4.1 ATGAAGATTTCTCGTTGGATTTTGTTTTACTGGCTTTTTCTTTGCGTTTTCGCATCCGGGTCTCTCTCAATTGACAATTTTAACCGAGCGTTTCCTATCA TTGAACCTGATCCTAATCACACGAAACTTCATCTTGCAAGTGAAGGATTGGAAGCTATCAAACGAATAACGAACCCTATTGCTGCTGTTGCTGTAATCGG TCCATATCGCTCTGGAAAATCTTTTCTGCTCAATCAGCTTCTTTCACTTTCTTGTTATGAAGGTTTTGGTGTTGGACATATGCGTGACACAAAGACCAAA GGGATTTGGGTTTGGGGAACCCCGGTTGAATTGGATATCAACGGAGTAAAAACTTCTGTGTTTTACCTTGATACAGAGGGATTTGAAAGTATTGGGAAGT CAAATGTCTATGATGATCGGATTTTTGCTCTGGCAACTGTTCTGAGCTCTGTGCTTATATATAATCTGCCTGAGACGATCCGAGAAGCTGACATATCTCG TCTGTCATTTGCTGTCGAGCTTGCTGAAGAATTTTATGGAAGAGTGAAGGGCCAAGATGTTGCATTTGAACCTGCAAAACTTTTGTGGCTTATCCAGCGT GATTTTCTACAAGGGAAGTCAGTGCAAGAAATGGTGAATGAAGCCCTCCAACACGTTCCTAACAATGATGGGGACAGAAATATTGACCAGGTTAATCAGA TCCGAGACTCGTTGGCTATCATGGGTGATAACAGCACTGCCTTCAGCTTGCCACAACCTCATCTCCTGCGAACAAAGCTTTGTGACATGAAGGATGGTGA GCTTGATCTTGTGTATGTTAAGAAGAGAGATCAGTTAAAAGAACTTGTTGCTAGCATTATTCGTCCAAAGATTGTGCAGGGTAGAACTCTAAATGGAAAG GAGTTTGTAGCTTTCTTGGAGCAGATACTCGAAGCCTTGAATAAAGGGGAGATCCCATCAACAGGCTCTTTGGTGGAGGTTTTCAATAAGGGTATTCTTG AGCGATGTTTGAAGCTATACAGTGAAATGATGGCAAAGTTACCCTTACCACTTTCTGAGAAATCTCTGCAAAATGTCCATGAAAACTCTAAAGGGGAAGC AATGAAATCTTTTGATGAACAACATTTTGGCCGTCATCATGCAAAGAGATCTGTCATGCAGCTGGATGAAGAAATAGAGAAGGTTTATAAGAATTTCGTA ATGGCAAATGAATATCAATCAGCAAAGCTCTGTGAGGCACTTTATTCTAGATGTGAGGACAGAATGGACCAGCTTCAGGTTCTCAGACTTCCTTCCATGG CAAAATTCAATGCAGGCTTCCTGCAATGCAACCAAAATTTTGAGCAGGAGTGTGTTGGACCTTCAAAGGCAAATTACGAGCTTCGCATGATGAAGATGAT GGGGAAATCAAAATCTTCATTTATAAATGAATACAACCACAGGCTCTTCAATTGGTTGGTGGTGTTCTCCCTTGTCATGGTGGTAGTGGGCCGCTTTATT ATAAAGTTTATTTTGATAGAAATTGGTGCGTGGATACTTTTTATCTTCCTAGAGACCTACACGAGGATGTTTTGGTCTGTGGAGTCTCTCTATTACAACC CAGTTTGGCATTTTATTGTCGCAACCTGGGAAACACTTGTTTACAGCCCTTTTCTTGATTTGGACAGATGGGCAATTCCACTTGGTTTGGTGGCAGCAAT TTTGGTGGTATATTGGCGGTGTTATGGTAGAAGGAAACATGGGTCACAGAGGCTGTTACCCTTGTACAATAATCCTAAAGGGGGTACTCATAGGCCGAGA ACAGACTAA
AA sequence Show only first row Show all	>Potri.005G217300.3 pacid=42805281 polypeptide=Potri.005G217300.3.p locus=Potri.005G217300 ID=Potri.005G217300.3.v4.1 annot-version=v4.1 MKISRWILFYWLFLCVFASGSLSIDNFNRAFPIIEPDPNHTKLHLASEGLEAIKRITNPIAAVAVIGPYRSGKSFLLNQLLSLSCYEGFGVGHMRDTKTK GIWVWGTPVELDINGVKTSVFYLDTEGFESIGKSNVYDDRIFALATVLSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLLWLIQR DFLQGKSVQEMVNEALQHVPNNDGDRNIDQVNQIRDSLAIMGDNSTAFSLPQPHLLRTKLCDMKDGELDLVYVKKRDQLKELVASIIRPKIVQGRTLNGK EFVAFLEQILEALNKGEIPSTGSLVEVFNKGILERCLKLYSEMMAKLPLPLSEKSLQNVHENSKGEAMKSFDEQHFGRHHAKRSVMQLDEEIEKVYKNFV MANEYQSAKLCEALYSRCEDRMDQLQVLRLPSMAKFNAGFLQCNQNFEQECVGPSKANYELRMMKMMGKSKSSFINEYNHRLFNWLVVFSLVMVVVGRFI IKFILIEIGAWILFIFLETYTRMFWSVESLYYNPVWHFIVATWETLVYSPFLDLDRWAIPLGLVAAILVVYWRCYGRRKHGSQRLLPLYNNPKGGTHRPR TD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	0	1
AT3G53540			unknown protein		Potri.006G213700 [exp]	2.23	0.8922
AT5G10080			Eukaryotic aspartyl protease f...		Potri.005G079900 [exp]	3.00	0.8854
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	3.87	0.9026	Pt-VPS33.2
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.001G372300 [exp]	4.89	0.8900	PHB.2
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	4.89	0.9091	ALDH22.1
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	5.09	0.9155
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169600 [exp]	7.07	0.8730
AT1G72960			Root hair defective 3 GTP-bind...		Potri.001G201000 [exp]	7.74	0.8757
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.016G093600 [exp]	7.93	0.8898	PGP1.2
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	8.48	0.9024

Compare expression of checked genes

Potri.005G217300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.