Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54610 706 / 0 ATGCN5, HAG1, HAG01, HAC3, BGT, HAT1, GCN5 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) AT1G76380 76 / 3e-14 DNA-binding bromodomain-containing protein (.1.2.3) AT1G20670 71 / 1e-12 DNA-binding bromodomain-containing protein (.1) AT5G55040 70 / 3e-12 DNA-binding bromodomain-containing protein (.1.2) AT2G34900 69 / 4e-12 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT5G63320 67 / 1e-11 NPX1 nuclear protein X1 (.1.2.3) AT3G01770 64 / 2e-10 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G14270 62 / 7e-10 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G27260 59 / 6e-09 GTE8 global transcription factor group E8 (.1.2) AT5G46550 57 / 2e-08 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045900 [exp] 872 / 0 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G009100 [exp] 75 / 1e-13 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.001G355300 [exp] 70 / 3e-12 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.004G206200 [exp] 69 / 6e-12 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 68 / 1e-11 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.001G335000 [exp] 67 / 3e-11 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.012G094300 [exp] 67 / 3e-11 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.005G252200 [exp] 65 / 1e-10 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.011G077100 [exp] 64 / 2e-10 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002718 [exp] 714 / 0 AT3G54610 704 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Lus10022999 [exp] 75 / 8e-14 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10001391 [exp] 73 / 3e-13 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10013220 [exp] 72 / 6e-13 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10030739 [exp] 72 / 8e-13 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10032629 [exp] 66 / 6e-11 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10043121 [exp] 65 / 1e-10 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10011989 [exp] 62 / 8e-10 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10002784 [exp] 60 / 3e-09 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1) Lus10032076 [exp] 55 / 1e-07 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF13508 [poplar] [flax] Acetyltransf_7 Acetyltransferase (GNAT) domain
Representative CDS sequence Show only first row Show all	>Potri.005G217400.1 pacid=42802565 polypeptide=Potri.005G217400.1.p locus=Potri.005G217400 ID=Potri.005G217400.1.v4.1 annot-version=v4.1 ATGGACACTCACTCTCACTTAACTGCACCTAATCGCTCTCGCAGCTCTCAATCTCCGTCTCCTTCGCACTCGGCCTCGGCCTCGGCCTCCGCCTCTGCAA CCTCTTCCATCCACAAACGGAAACTCGCCGCGGCTGCGGCGGCGTACGACGACCACTTGCCACCATTTGCTCCGTCTTCTCTGTCCGCAGACACTCGCGA CGGCGCTCTCACCTCCAACGACGACCTTGAGAGCATCTCCGCTCGCGGCGCCGACTCTGACTCCGATGACGCTGAAGATTCCGACACCGTCCTCGACGAT GACGAGGAAGACTTCGACAACGATTCCTCCATGAGAACGTTCACCACAGCCCGCCTCGAGACCACTAACGCCGCTGGCAGCAGCAGCCGGAACACGAAGA TCAAAATGGAGAACACGAATGTCAAGATTGAAAATTCTGATAGCGGGAAGGACGGTGGGCACACAGGGACTGGTGCAGTGGGGCCTGCTGCAGCGGGGAG TTCTGGGCCAGGGATTGTGGTGAAGGAGGATTCTGTTAAAATATTTACGGAAAATTTGCAGGCTAGTGGAGCTTATAGCGCGAGAGAAGAGAGTTTGAAG AGAGAGGAGGAAGCAGGAAAACTCAAGTTTGTGTGTTATTCAAATGATGATGTTGATGAGCATATGGTTTGGCTGATAGGATTGAAGAATATATTTGCGA GGCAGTTGCCTAACATGCCCAAGGAGTACATAGTTCGACTTGTGATGGATAGAAGCCACAAATCTGTGATGATTATTAGACGCAATCAGGTGGTTGGTGG TATCACTTATCGTCCATATGTCAGTCAGAGGTTTGGGGAGATAGCTTTTTGTGCAATCACCGCAGATGAACAAGTAAAAGGTTATGGCACGAGATTGATG AATCACTTAAAGCAGCATGCACGTGATGTTGATGGGTTAACACATTTTCTGACGTATGCTGACAATAATGCTGTTGGTTATTTTATCAAGCAGGGTTTCA CAAAAGAGATTTACTTGGAGAAAGATCGATGGCAAGGGTATATTAAAGACTATGATGGAGGTATCTTAATGGAATGCAAGATTGATCAAAAACTTCCTTA CACTGACTTATCAACCATGATTCGTCGTCAGAGACAGGCAATTGATGAAAAGATAAGAGAGCTATCCAATTGTCATATCATCTATCCTGGAATTGATTTT CAAAAGAAAGAAGCTGGTATTCCCAAGAAAATCATCAAAGTCGAGGATATTCCTGGCTTGAGGGAGGCTGGGTGGACTCTTGATCAATGGGGCCATTCAC GTTTCAGAACATTAAACACTGCTACGGATAGTGCCACAAATCAAAAACATTTGACTGCATTTATGCGCTCACTTTTAAAGTCAATGCATGACCATGTGGA TGCTTGGCCATTTAAGGAACCAGTTGATGCTCGTGATGTCCCTGATTATTATGACATCATCAAGGATCCCATGGATCTGAAGACGATGTCAAAAAGGGTA GAGTCAGAACAATACTATGTAACACTTGAGATGTTCATTGCTGATGTTAAGAGGATGTGTGCCAATGCACGGACATACAACTCACCTGATACCATTTATT ATAAGTGTGCAACCAGGCTGGAAGCCCATTTTCAAAGCAAGGTTCAGTCAGGCATCCAATCTGCATATTGCCAGAGGAAATTTGGAAGAGTGGGTTTGCC TTTGGCAGTTGTCAGGTTCTTGAACTGCGTGGATGGTCACAACTTTTTACCAAGCTTGGCGGGCGTACATCCATCAATGGTGGGCCTTTTGATAGTTCAT TGA
AA sequence Show only first row Show all	>Potri.005G217400.1 pacid=42802565 polypeptide=Potri.005G217400.1.p locus=Potri.005G217400 ID=Potri.005G217400.1.v4.1 annot-version=v4.1 MDTHSHLTAPNRSRSSQSPSPSHSASASASASATSSIHKRKLAAAAAAYDDHLPPFAPSSLSADTRDGALTSNDDLESISARGADSDSDDAEDSDTVLDD DEEDFDNDSSMRTFTTARLETTNAAGSSSRNTKIKMENTNVKIENSDSGKDGGHTGTGAVGPAAAGSSGPGIVVKEDSVKIFTENLQASGAYSAREESLK REEEAGKLKFVCYSNDDVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMIIRRNQVVGGITYRPYVSQRFGEIAFCAITADEQVKGYGTRLM NHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWQGYIKDYDGGILMECKIDQKLPYTDLSTMIRRQRQAIDEKIRELSNCHIIYPGIDF QKKEAGIPKKIIKVEDIPGLREAGWTLDQWGHSRFRTLNTATDSATNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRV ESEQYYVTLEMFIADVKRMCANARTYNSPDTIYYKCATRLEAHFQSKVQSGIQSAYCQRKFGRVGLPLAVVRFLNCVDGHNFLPSLAGVHPSMVGLLIVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Potri.005G217400 [exp]	0	1
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.008G026900 [exp]	12.80	0.7504
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.007G070900 [exp]	14.28	0.7313
AT3G15280			unknown protein		Potri.001G398300 [exp]	19.44	0.6881
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.012G110400 [exp]	22.44	0.6952
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.015G044400 [exp]	22.64	0.6698
AT5G25270			Ubiquitin-like superfamily pro...		Potri.006G059700 [exp]	23.32	0.6885
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Potri.003G093900 [exp]	24.45	0.6301
AT5G49960			unknown protein		Potri.003G008800 [exp]	26.49	0.6969
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.002G117200 [exp]	27.56	0.7139
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Potri.013G008400 [exp]	38.83	0.6807

Compare expression of checked genes

Potri.005G217400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.