Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	VATF.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02620 226 / 8e-78 vacuolar ATPase subunit F family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01990 [poplar] [flax] ATP-synt_F ATP synthase (F/14-kDa) subunit
Representative CDS sequence Show only first row Show all	>Potri.005G217600.1 pacid=42802989 polypeptide=Potri.005G217600.1.p locus=Potri.005G217600 ID=Potri.005G217600.1.v4.1 annot-version=v4.1 ATGGCAAACAGAGCTCAAATCGCGACCAACAACTCTGCACTCATTGCAATGATTGCCGATGAGGACACGATTGTTGGACTTTTGATGGCTGGAGTGGGTA ATGTTGATTTGCGGAGAAAGACGAATTACCTCATCGTGGATTCCAAAACAACTGTTAAACAAATTGAAGATGCATTTAAAGAGTTCACGACAAGGGAGGA TATAGCCATAGTGTTGATAAGTCAATTTGTTGCAAACATGATAAGATTTTTGGTCGATAGCTACAACAAGCCAGTTCCAGCGATTTTGGAGATTCCTTCG AAAGACCATCCTTATGACCCAACACAGGATTCAGTTCTTTCAAGAGTGAAGTACCTCTTTTCTGCAGAATCAGTGGCATCTGGAAGGCGTTGA
AA sequence Show only first row Show all	>Potri.005G217600.1 pacid=42802989 polypeptide=Potri.005G217600.1.p locus=Potri.005G217600 ID=Potri.005G217600.1.v4.1 annot-version=v4.1 MANRAQIATNNSALIAMIADEDTIVGLLMAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVLISQFVANMIRFLVDSYNKPVPAILEIPS KDHPYDPTQDSVLSRVKYLFSAESVASGRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02620			vacuolar ATPase subunit F fami...		Potri.005G217600 [exp]	0	1	VATF.1
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Potri.009G124600 [exp]	2.00	0.9273
AT2G21190			ER lumen protein retaining rec...		Potri.009G128900 [exp]	2.64	0.9162
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.016G088200 [exp]	3.00	0.9378	SYP71.2
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.001G440600 [exp]	3.46	0.9167	Pt-GSNAP.2
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.012G142400 [exp]	3.60	0.9045
AT3G04780			Protein of unknown function (D...		Potri.013G039500 [exp]	3.74	0.9345
AT5G54750			Transport protein particle (TR...		Potri.001G418400 [exp]	6.70	0.9263
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Potri.007G020400 [exp]	8.48	0.9068
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Potri.015G072100 [exp]	8.94	0.9147
AT3G12587			Oligosaccaryltransferase (.1)		Potri.008G053200 [exp]	8.94	0.8957

Compare expression of checked genes

Potri.005G217600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.