Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TSA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54640 434 / 2e-154 TRP3, TSA1 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) AT4G02610 409 / 9e-145 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045700 [exp] 561 / 0 AT3G54640 432 / 9e-154 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024849 [exp] 456 / 4e-163 AT4G02610 447 / 7e-160 Aldolase-type TIM barrel family protein (.1) Lus10002719 [exp] 454 / 4e-162 AT3G54640 438 / 6e-156 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) Lus10018760 [exp] 450 / 3e-160 AT4G02610 434 / 1e-154 Aldolase-type TIM barrel family protein (.1) Lus10024848 [exp] 407 / 2e-138 AT4G02610 421 / 3e-144 Aldolase-type TIM barrel family protein (.1) Lus10014725 [exp] 220 / 1e-71 AT4G02610 238 / 1e-79 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00290 [poplar] [flax] Trp_syntA Tryptophan synthase alpha chain
Representative CDS sequence Show only first row Show all	>Potri.005G217700.1 pacid=42804766 polypeptide=Potri.005G217700.1.p locus=Potri.005G217700 ID=Potri.005G217700.1.v4.1 annot-version=v4.1 ATGGCTGTTGCCCTGAAATCAACCCCTTCCTTCCTCCAACTGAAGAAACCGGAGACCTATTTCATCGTTCGTAATAAACCCCCTATCGTTTCAACCAGAA GGTTCGCGCCAATGGCGTCTCTCACTGCAACCCGAAGTCTTGGTATAGGAGAAACATTCTCCAATCTCAAGAAACAAGGCAAAGTGGCGCTCATTCCATA CATCACAGCCGGTGATCCTGATCTTTCAACAACGGCAGAAGCCTTGAAGTTGTTGGACGCATGTGGATGTGACATAATTGAACTGGGTGTTCCTTACTCT GATCCTTTGGCAGATGGTCCAGTTATCCAGGCTGCAGCTACACGCTCCTTGGCTAGAGGGACCAATTTCGAAGCAATCACATCAATGTTAAAGGAGGTGG TTCCCCAAGTATCGTGTCCAATTGCATTATTTACATATTACAATCCAATTCTAAAGCGTGGAATTGAGAAGTTTATGTCCACTGTAAACGACATCGGCGT GCATGGACTTGTGGTCCCAGATGTTCCTCTGGAGGAGACTCAAGTTCTGAGGAAGGAAGCTGTCAAGAATGGGCTTGAACTGGTACTTCTTACAACACCC ACTACTCCAACAGAACGAATGAAAGCCATTGTTGAAGCGGCAGATGGATTTGTGTATCTTGTAAGCTCAGTTGGAGTTACTGGTACTCGTGCTTCTGTAA GTGACAGAGTTCAAACCCTTCTCCAGGATATTAAAGAGACAACAACCAAACCTGTAGCTGTTGGCTTTGGCATATCAAAACCAGAGCATGTCAAGCAGGT AGCAGGATGGGGTGCTGATGGTGTCATTGTTGGTAGTGCGATGGTGAAGTTGTTGGGTGAAGCAAAATCTCCCGAGGAAGGATTGAAGGAACTAGAGAGT TTCACCAAATCTTTGAAAGCTGCGCTTCCTTGA
AA sequence Show only first row Show all	>Potri.005G217700.1 pacid=42804766 polypeptide=Potri.005G217700.1.p locus=Potri.005G217700 ID=Potri.005G217700.1.v4.1 annot-version=v4.1 MAVALKSTPSFLQLKKPETYFIVRNKPPIVSTRRFAPMASLTATRSLGIGETFSNLKKQGKVALIPYITAGDPDLSTTAEALKLLDACGCDIIELGVPYS DPLADGPVIQAAATRSLARGTNFEAITSMLKEVVPQVSCPIALFTYYNPILKRGIEKFMSTVNDIGVHGLVVPDVPLEETQVLRKEAVKNGLELVLLTTP TTPTERMKAIVEAADGFVYLVSSVGVTGTRASVSDRVQTLLQDIKETTTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKLLGEAKSPEEGLKELES FTKSLKAALP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.005G217700 [exp]	0	1	TSA1.1
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Potri.001G185600 [exp]	3.74	0.7512
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	8.94	0.7420	PDF1.2
AT1G08110			lactoylglutathione lyase famil...		Potri.009G007200 [exp]	10.48	0.7171
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.009G092200 [exp]	10.48	0.7448
AT3G62810			complex 1 family protein / LVR...		Potri.014G129800 [exp]	14.28	0.7358
AT4G29830		VIP3	vernalization independence 3, ...		Potri.006G145800 [exp]	15.09	0.7422
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Potri.009G077800 [exp]	18.33	0.7114
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	20.61	0.7002
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.017G001800 [exp]	25.29	0.7193	Pt-COS1.2
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Potri.012G098500 [exp]	26.32	0.6679

Compare expression of checked genes

Potri.005G217700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.