Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02590 307 / 2e-104 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 264 / 1e-87 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G24260 137 / 1e-37 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G58010 133 / 7e-37 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G30980 133 / 1e-36 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT1G09530 53 / 2e-07 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G20180 51 / 4e-07 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT4G33880 50 / 6e-07 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT4G36930 50 / 1e-06 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G14760 49 / 1e-06 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045400 [exp] 416 / 1e-147 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G053500 [exp] 223 / 3e-71 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 216 / 2e-68 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.018G109500 [exp] 145 / 5e-40 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 144 / 9e-40 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 123 / 6e-32 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.013G001300 [exp] 55 / 3e-08 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G001800 [exp] 54 / 4e-08 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G252800 [exp] 52 / 2e-07 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002720 [exp] 335 / 1e-115 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 321 / 3e-110 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 285 / 2e-95 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014726 [exp] 261 / 4e-88 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 192 / 4e-59 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 192 / 1e-58 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 142 / 1e-39 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10036286 [exp] 140 / 2e-39 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10033592 [exp] 54 / 6e-08 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10022833 [exp] 52 / 3e-07 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G217800.1 pacid=42803687 polypeptide=Potri.005G217800.1.p locus=Potri.005G217800 ID=Potri.005G217800.1.v4.1 annot-version=v4.1 ATGGCCAATAATCCAACCGAACCTCCAACCGACGATTTCCTCCAGGAAATCCTCGGGATGCCTAACTTTGCTTCGGCTGAAGCCGGTTTGGTTGGAGCCG ATGCTGGCCTGGCTGGCGCCGCTGCTGCTCAAGCTTCTATGATGCTTCAGCTTAGCTCCGGTGATGGTTCCGGCCACATCTCCGACCTTGGCGGTGCTCC TGGAGGAGGAAGCGCCGGGTTTCACGGCTTTCCCTTGGGGCTTAGCTTGGAGCAAGGGAAGGGAGGGTTTCTGAAGCCCGAGGAGGCGTCTGGGAGTGGA AAAAGGTTCCGTGATGAGATTGTTGATGGTAGAGCGAAAAATGTTTTTCATGGTCAACCAATGCCCACAACGGTTGCTATAGCACCGCATCCACCAGCAA TGCGCCCAAGGGTACGGGCTAGACGAGGTCAAGCCACAGATCCACACAGTATTGCTGAACGGTTGCGCAGAGAAAGAATAGCCGAAAGAATCAGGGCATT GCAGGAGCTGGTTCCTAGTGTCAACAAGACGGATCGAGCCACCATGCTTGATGAAATTGTGGATTATGTGAAGTTTTTAAGGCTTCAAGTAAAGGTATTA AGCATGAGTAGACTGGGCGGAGCTGGTGCTGTCGCACCACTTGTAACGGACATCCCACTATCATCAGTTGAGGATGAAACTGGCGAAGGAGGAAGAAACC AACCAGCTTGGGAGAAGTGGTCGAATGATGGCACTGAACGGCAGGTAGCTAAGCTAATGGAGGAAAATGTTGGCGCTGCCATGCAATTTCTTCAATCGAA GGCTCTTTGCATCATGCCCATCTCACTAGCCACGGCCATTTACCATACACAACCACCAGATACCACTACTATTGTCAAGCCAGAAACAAATCCCCCATCA TAG
AA sequence Show only first row Show all	>Potri.005G217800.1 pacid=42803687 polypeptide=Potri.005G217800.1.p locus=Potri.005G217800 ID=Potri.005G217800.1.v4.1 annot-version=v4.1 MANNPTEPPTDDFLQEILGMPNFASAEAGLVGADAGLAGAAAAQASMMLQLSSGDGSGHISDLGGAPGGGSAGFHGFPLGLSLEQGKGGFLKPEEASGSG KRFRDEIVDGRAKNVFHGQPMPTTVAIAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRATMLDEIVDYVKFLRLQVKVL SMSRLGGAGAVAPLVTDIPLSSVEDETGEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHTQPPDTTTIVKPETNPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G217800 [exp]	0	1
AT5G51670			Protein of unknown function (D...		Potri.015G131800 [exp]	2.00	0.8586
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	3.16	0.8468
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Potri.002G033000 [exp]	4.89	0.8494	Pt-CYP722.2
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Potri.010G186700 [exp]	5.47	0.8460
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.002G018600 [exp]	6.48	0.8310	Pt-SSTP.2
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.015G029200 [exp]	8.48	0.8237
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.005G243000 [exp]	11.83	0.8191	SSTP.3
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237100 [exp]	12.36	0.8506
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Potri.005G045800 [exp]	12.96	0.8048
AT3G25280			Major facilitator superfamily ...		Potri.002G249100 [exp]	14.14	0.8306

Compare expression of checked genes

Potri.005G217800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.