Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02580 460 / 2e-166 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045200 [exp] 507 / 0 AT4G02580 458 / 8e-166 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018762 [exp] 470 / 2e-170 AT4G02580 439 / 5e-158 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Lus10014727 [exp] 468 / 1e-169 AT4G02580 438 / 1e-157 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Lus10002721 [exp] 463 / 1e-167 AT4G02580 432 / 3e-155 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Lus10024851 [exp] 454 / 2e-163 AT4G02580 418 / 2e-149 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF01257 [poplar] [flax] 2Fe-2S_thioredx Thioredoxin-like [2Fe-2S] ferredoxin
Representative CDS sequence Show only first row Show all	>Potri.005G218000.5 pacid=42803665 polypeptide=Potri.005G218000.5.p locus=Potri.005G218000 ID=Potri.005G218000.5.v4.1 annot-version=v4.1 ATGCTAGCTCGTATCGTAGCCACGCGTCTCCTCGAGATCCGTCAGTCTCTCCGCTTAACTCCTCAGGCATCTCGATCCTTATCCACTGCATTGAACTACC ACATTGATACTGCAGATAACAATCCGGACCTTCCCTGGGAGTTTTCGGCCTCGAATAAAGAAAAGGTTAAAGAAATAGTATCTCACTATCCATCCAACTA CAAGCAATCAGCAGTTATTCCTCTGTTAGATCTTGCGCAGCAACAGCATGGAGGGTGGCTCCCTGTTTCAGCAATGAATGCAGTGGCTAAGGTTATTGAA GTTGCTCCTATCCGTGTGTATGAAGTCGCAACATTTTACTCAATGTTCAACAGGTCTCCGGTGGGCAAATATCACCTATTGGTTTGCGGCACAACACCAT GTATGATACGAGGTTCACGGGAAATTGAAGATGCATTACTGAAACACTTGGGAGTGAAGCGCAATGAAGTAACCAAGGATGGCCTTTTCTCTGTTGGAGA AATGGAATGTATGGGATGTTGTGTAAATGCTCCTATGATTACAGTGGCCGATTACTCCAATGGATCTGAAGGATATACTTACAATTATTACGAAGATGTT ACTCCGAAACGAGTTGTTGAGATAGTTGAGATGCTAAGAAAGGGGGAGAAGCCACCGCATGGCACACAAAACCCAAAACGCATTAAGTGTGGACCAGAAG GTGGAAATACTACTCTGCATGGAGAACCAAAACCTCCTCCATGTCGGGATCTTGATTCCTGCTAA
AA sequence Show only first row Show all	>Potri.005G218000.5 pacid=42803665 polypeptide=Potri.005G218000.5.p locus=Potri.005G218000 ID=Potri.005G218000.5.v4.1 annot-version=v4.1 MLARIVATRLLEIRQSLRLTPQASRSLSTALNYHIDTADNNPDLPWEFSASNKEKVKEIVSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIE VAPIRVYEVATFYSMFNRSPVGKYHLLVCGTTPCMIRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYYEDV TPKRVVEIVEMLRKGEKPPHGTQNPKRIKCGPEGGNTTLHGEPKPPPCRDLDSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02580			NADH-ubiquinone oxidoreductase...		Potri.005G218000 [exp]	0	1
AT3G09800			SNARE-like superfamily protein...		Potri.001G197200 [exp]	1.41	0.9633
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Potri.002G095600 [exp]	2.44	0.9334	ANNAT1.1
AT5G59410			Rab5-interacting family protei...		Potri.009G032100 [exp]	2.44	0.9405
AT5G43460			HR-like lesion-inducing protei...		Potri.010G073500 [exp]	2.44	0.9433
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	6.32	0.9344	KDSA.1
AT4G20760			NAD(P)-binding Rossmann-fold s...		Potri.011G157300 [exp]	7.61	0.9102
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.007G060800 [exp]	9.38	0.9044
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.005G199100 [exp]	9.79	0.9218	Pt-KDSA.2
AT4G00560			NAD(P)-binding Rossmann-fold s...		Potri.014G079700 [exp]	12.40	0.9237
AT3G29300			unknown protein		Potri.018G079400 [exp]	12.96	0.9049

Compare expression of checked genes

Potri.005G218000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.