Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47720 114 / 7e-30 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) AT4G20010 105 / 4e-26 PTAC9, OSB2 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) AT5G44785 94 / 1e-21 OSB3 organellar single-stranded DNA binding protein 3 (.1.2) AT1G31010 74 / 9e-15 OSB4 organellar single-stranded DNA binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045100 [exp] 491 / 4e-177 AT1G47720 112 / 2e-29 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.014G035600 [exp] 113 / 7e-29 AT1G47720 158 / 6e-46 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.001G394200 [exp] 97 / 6e-23 AT4G20010 269 / 7e-88 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) Potri.002G129166 [exp] 47 / 5e-06 AT1G47720 84 / 2e-19 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014728 [exp] 350 / 1e-121 AT1G47720 106 / 3e-27 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10018763 [exp] 340 / 8e-118 AT1G47720 109 / 3e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10024852 [exp] 335 / 8e-116 AT1G47720 110 / 2e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10002722 [exp] 186 / 3e-58 AT5G44785 57 / 2e-09 organellar single-stranded DNA binding protein 3 (.1.2) Lus10021767 [exp] 108 / 4e-27 AT1G47720 124 / 1e-31 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10032760 [exp] 0 / 1 AT1G47720 74 / 2e-15 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00436 [poplar] [flax] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Potri.005G218100.2 pacid=42805380 polypeptide=Potri.005G218100.2.p locus=Potri.005G218100 ID=Potri.005G218100.2.v4.1 annot-version=v4.1 ATGGCTTTAGAGCAAGCACTAGCACTATCACCAGCAACTAACCTCTTTTTTTCAATTTCGAACCCCCCCCTCACAAACACCAAAACTCCTGCCTTGTCCC TGAACCCTCTCACCTCCTCCTCGAAGAGGTCCCATTTCCAACGCAGCTTGAAATGCTCCGCTGATTATAGAGATAACCAGTACAGTCAAGCGGTTACGCA TGCTAAACCGGCTGAGATTCAATGGAACAAGGAGCTCTGTAACTCGGTGCACCTCATCGGGATCGTTGGGACCCCTGTAGAAATCAAGCACCTCCCCTCC GGCAAGGTAGTCGCCTGGACACGACTTGCTGTCAAGAAATCTGCAAATGACACCTCCTGGATCAATTTGACATTCTGGGATGATTTGGCGCAAGTTTCTT CTCAGCATGTAGAGAAAGGCCACCAAATATACGTGTCTGGTCGATTGATCACAGATTCAGTTGAAAATGATGAAGGGAAGCTGCAGACCTACTACAAGGT AGTTGTCCAGCAGCTGAATTTTATTGAAAGAAGCTCTTCAAGAGGATTATATGACTCCGACTTTAATAACACGGCAGCTGGTAGTAAGTTTGGTAACAAC ACTGCAAATGACATGGGTTCCATGGAAGAACGGTGGCAAGCTTTTTTTGCTAATCCTTTGGAGTGGTGGGATAACAGGAAAGATAAGAGGAACCCAAAGT ATCCTGATTTCAAGCACAAAGACACTGGAGAAGCTTTGTGGGTTGAAGGCAGGTACAATCCTCCTTGGGTGAAGTCCCAATTAGCTATATTGGACGGACA AATGGGATCTCTTCAAGATCAGGACTCTAGGTTGCATGAAAGTTCAATGTCTGGTGATGATTTCATTTCCTTGTCCTAA
AA sequence Show only first row Show all	>Potri.005G218100.2 pacid=42805380 polypeptide=Potri.005G218100.2.p locus=Potri.005G218100 ID=Potri.005G218100.2.v4.1 annot-version=v4.1 MALEQALALSPATNLFFSISNPPLTNTKTPALSLNPLTSSSKRSHFQRSLKCSADYRDNQYSQAVTHAKPAEIQWNKELCNSVHLIGIVGTPVEIKHLPS GKVVAWTRLAVKKSANDTSWINLTFWDDLAQVSSQHVEKGHQIYVSGRLITDSVENDEGKLQTYYKVVVQQLNFIERSSSRGLYDSDFNNTAAGSKFGNN TANDMGSMEERWQAFFANPLEWWDNRKDKRNPKYPDFKHKDTGEALWVEGRYNPPWVKSQLAILDGQMGSLQDQDSRLHESSMSGDDFISLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.005G218100 [exp]	0	1
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.001G229166 [exp]	1.00	0.9180
AT3G20330		PYRB	PYRIMIDINE B (.1)		Potri.001G357200 [exp]	9.05	0.8693
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028450 [exp]	15.16	0.8508
AT3G21690			MATE efflux family protein (.1...		Potri.011G002500 [exp]	15.49	0.8371
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Potri.011G150700 [exp]	17.43	0.8524
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Potri.006G204900 [exp]	17.74	0.8656	PtrcPrx2cysB,Pt-BAS1.1
AT4G17760			damaged DNA binding;exodeoxyri...		Potri.001G139100 [exp]	18.76	0.8438
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.005G215900 [exp]	25.29	0.8264
AT3G01750			Ankyrin repeat family protein ...		Potri.008G179100 [exp]	27.34	0.8347
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Potri.004G080100 [exp]	30.49	0.8626	Pt-MIND.1

Compare expression of checked genes

Potri.005G218100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.