Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54650 546 / 0 FBL17 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044800 [exp] 827 / 0 AT3G54650 561 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024856 [exp] 628 / 0 AT3G54650 634 / 0.0 RNI-like superfamily protein (.1) Lus10018767 [exp] 612 / 0 AT3G54650 618 / 0.0 RNI-like superfamily protein (.1) Lus10024855 [exp] 534 / 0 AT3G54650 548 / 0.0 RNI-like superfamily protein (.1) Lus10018769 [exp] 518 / 2e-180 AT3G54650 520 / 0.0 RNI-like superfamily protein (.1) Lus10018768 [exp] 219 / 1e-65 AT3G54650 216 / 1e-64 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.005G218400.1 pacid=42803382 polypeptide=Potri.005G218400.1.p locus=Potri.005G218400 ID=Potri.005G218400.1.v4.1 annot-version=v4.1 ATGCACTTCGAAAACCAACCACACATTCCCCCAGCCACTCCCAGCGGCTCCATCGCCTCTTTTACCTCCATGGATACCCCCCACCGTGCCAAAAAACACC GCGGCAGTTACAACTGCGGCCGTTGCGGAGTCCCTAAAAAAGGCCACGTCTGCCATCTCCCTCCCAGCACCACCACCACACCAACGCAAACTCCCACTGA CTCCTCCGTTTCAGTCTCCACCTCAACTTCTCGTCCACCGCCGCCGTCACGTCAGCAGCACTCGAATCTCCGCAGAGCGTTGTCATTTGATGACACTGAC TTACGGTGTGAATCATCGGATATTGAAATCGATGAATCGGAGTTGGATCTGTTTGATTCAGGTTCTGGGAAGTTGCCGGTGAGCTGCATGTGGGAGATTT TGAGGAGGTTGCCGCCGGAGGGGTTGTTGGCGGCAGCTAGGGTGTGTAAGGGCTGGAGAGAGACAGCGAGGAGGTTATGGAGGGCGGCGGAGGAGCTTAG ACTCACGGTTCCACCTAGGACTCAGCTTGTGTTTGTTGGATCTTTGTTGCGGAGGTGTACTGGACTCAGTAGACTCAGTCTTAGATCGGAAAGTGATCTG GACGCGACGATGTTGGCTTGCATTGCGTTTTCTTGCCCTAATTTGGAAGTGATGGAGTTTTCTACATCCGAAACTCTAGTCAATAGGATTACAGGTGATG AACTGGGTTGTTTTGTTGCTAATAAACGTTGCCTACGAAGCCTTAAGATGGAAGGGTGTTCTAATCTGGGGGGATTCGTCCTCTGTTCCTCTAGTCTTTC TACACTCTGGCTTTCAGATCTGTATTGCCTATCTAAGATGGTCTTTAACTGTCCCAATTTGAAAGAGATTTCCCTAGATTTTTCTCGCCAAGAAAATGAG AGTACTGATCTTATTGCTATGGTTGATGGTTTGGGAAGGAGTTGTCCTCGGCTGCAAAACATACATGTTGCATCATTTCGGCTTTCTCATGCCACAGTGC TTGCTCTCACAGCTGCAAACTTGAGGGGGTTGCGAATGCTTTCACTTGTTTTTGGAACTGAAATTACCGATGCATCTGTTGCTGCCATTTCTCAAAGCTA TTCAAAATTAGAATTGCTTGATCTGAGTGGGTCTAGTATCAGTGACAGTGGCATTGGAATGATATGCAATGTATTCCCTGGAACACTTTCGAGACTTCTT CTTGCACTCTGTCCCAACATCACTTCAAGTGGAATTCAATTTGCGACAGCTCAATTGCCTCTTCTTGAACTCATGGACTGTGGAATGACAATATGTGATC CGAGCTCTCAAAATCCAACCTGCGATGAAAGTGGTGATTTTGAGTTGCAGATGACATTTAAAAATAAATTACACCTTATATATCAGAAGCTTATCATTAA ACATAGCCGGTTGAAAAAGCTCAGCCTATGGGGCTGTTCTGGCTTAGATGCTCTATACTTAAACTGCCCAGAACTCAACGATTTGAATCTGAACTCCTGT AAAAACTTGCATCCAGAGAGAGTGCTCCTGCAGTGCCCCAGTTTAGAAAGTGTGCATGCATCAGGATGTCACAGATTGCTGACTGGGGCTATTCAGAGTC AGGTCAGCAACAATCTTGATGCAATGGAAAACCAATCCCCCCATAAACGTTTGGCTGATGGCTCAAAGAGGGTTAGGGTCCCCCTATTCCTGAGTCAGCA GCCATGTGATGAGGATAAGAAGCGGAGAAGAATTGGGAGTCGTCCATGCAAGGTGCTTGTGGACTGA
AA sequence Show only first row Show all	>Potri.005G218400.1 pacid=42803382 polypeptide=Potri.005G218400.1.p locus=Potri.005G218400 ID=Potri.005G218400.1.v4.1 annot-version=v4.1 MHFENQPHIPPATPSGSIASFTSMDTPHRAKKHRGSYNCGRCGVPKKGHVCHLPPSTTTTPTQTPTDSSVSVSTSTSRPPPPSRQQHSNLRRALSFDDTD LRCESSDIEIDESELDLFDSGSGKLPVSCMWEILRRLPPEGLLAAARVCKGWRETARRLWRAAEELRLTVPPRTQLVFVGSLLRRCTGLSRLSLRSESDL DATMLACIAFSCPNLEVMEFSTSETLVNRITGDELGCFVANKRCLRSLKMEGCSNLGGFVLCSSSLSTLWLSDLYCLSKMVFNCPNLKEISLDFSRQENE STDLIAMVDGLGRSCPRLQNIHVASFRLSHATVLALTAANLRGLRMLSLVFGTEITDASVAAISQSYSKLELLDLSGSSISDSGIGMICNVFPGTLSRLL LALCPNITSSGIQFATAQLPLLELMDCGMTICDPSSQNPTCDESGDFELQMTFKNKLHLIYQKLIIKHSRLKKLSLWGCSGLDALYLNCPELNDLNLNSC KNLHPERVLLQCPSLESVHASGCHRLLTGAIQSQVSNNLDAMENQSPHKRLADGSKRVRVPLFLSQQPCDEDKKRRRIGSRPCKVLVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.005G218400 [exp]	0	1
AT5G18610			Protein kinase superfamily pro...		Potri.010G215100 [exp]	6.00	0.8952
AT5G52800			DNA primases (.1.2.3)		Potri.017G148000 [exp]	8.24	0.8919
AT4G34660			SH3 domain-containing protein ...		Potri.009G123200 [exp]	9.16	0.8556
AT3G50150			Plant protein of unknown funct...		Potri.016G040100 [exp]	9.79	0.8842
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.018G019600 [exp]	11.31	0.8477
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	14.42	0.8615
AT1G07270			Cell division control, Cdc6 (....		Potri.001G250200 [exp]	14.49	0.8803
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.002G208251 [exp]	15.65	0.8841
AT4G03965			RING/U-box superfamily protein...		Potri.002G224200 [exp]	19.89	0.8529
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	22.09	0.8781

Compare expression of checked genes

Potri.005G218400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.