Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06800 652 / 0 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 645 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 514 / 4e-179 alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 387 / 3e-129 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 303 / 2e-97 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 293 / 4e-94 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 291 / 7e-94 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 290 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1) AT2G42690 269 / 3e-85 alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 268 / 1e-83 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044700 [exp] 938 / 0 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 554 / 0 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 382 / 1e-127 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 371 / 2e-123 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150700 [exp] 320 / 1e-104 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G231600 [exp] 315 / 3e-102 AT1G05800 524 / 0.0 DONGLE, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054800 [exp] 296 / 4e-96 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 291 / 9e-94 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 287 / 3e-92 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038524 [exp] 370 / 3e-124 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 359 / 5e-120 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 362 / 1e-119 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 340 / 6e-111 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10025519 [exp] 306 / 3e-98 AT2G31690 468 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Lus10026735 [exp] 278 / 2e-87 AT2G31690 472 / 1e-163 alpha/beta-Hydrolases superfamily protein (.1) Lus10013932 [exp] 270 / 5e-86 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 270 / 2e-85 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 260 / 1e-81 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 259 / 2e-81 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.005G218500.1 pacid=42805367 polypeptide=Potri.005G218500.1.p locus=Potri.005G218500 ID=Potri.005G218500.1.v4.1 annot-version=v4.1 ATGGCCAACCTCTCTCTATCCAGCACTCTTCAGTTTCCTTTCAAACAAGACATTTTCCAATCCAGAAAATGTTCCTCTGTGCAACTTCCAAGCCAAAACT CTCAACTCGGCCGATCAAGATCCATAGATATCACAGGAAAAACATCCACCAGTGCCATACCTTGTGTCCTGTCCAAAACAAGCGAGTCGTTAACTTCCAT AATCACAGAGCTCGAAAAGGAACAAGACCACGAAACCAATACGAACACCAAAGAACCAGAGCGAAAACTGGCTGATGTGTGGAGAGAAATCCAGGGTCAA GATGATTGGGTTGGCCTTCTTGACCCAATGGACCCACTCTTACGATCGGAACTAATCAGATATGGCGAGATGGCGCAAGCTTGCTACGATGCTTTCGATT TTGATCCATTCTCAAAATATTGTGGCAGCTGCAGATTTATACGTCGCAGGTTTTTGGAGTCACTAGGAATGGCACACCATGGATACGAGGTCACCAGGTA CTTGTATGCCACATCAAACATCGACCTTTCGAATTTTTTCAAAAAATCTCGTTGGCCTAAAGTCTGGAGCAACAAGGCCAACTGGATTGGATACGTCGCC GTTTCTGACGATGAAACAACAAAATGTTTAGGCCGCCGTGACATTAGTATTGCGTGGAGGGGCACGGTGACACATCTAGAGTGGATTTCTGACTTAATGG ACTTTCTCAAGCCAATCAATGGTAATAAAATCCCCTGCCCGGATCCGACTGTCAAAGTCGAATACGGATTCTTGGATCTTTACACGGACAAAGATGAGAA TTGTCGATTTTGTAAATATTCAGCTAGAGAGCAGATTTTATCGGAGGTGAAAAGGTTAACTGAGATGTATGCCGATGAGGAAATGAGCATTACAATTACC GGGCACAGTTTAGGCAGTGCTTTGGCTATTCTAAGCGCGTACGATATTGCGGAAACGGGTTTACATGTGATGCAAGATGGCCGGGCATTGCCCGTTTCTG TGTTTTCCTTTTCAGGTCCTCGGGTCGGGAATGTGAGGTTCAAGGAAAGGATCGAGTCATTGGGGGTCAAGGTTTTGAGGGTGGTTAACGTGCAGGATAT GGTGCCTAAATCACCTGGATTGTTTTTTAATGAACAAGTGCCGCCTCCGTTAATGAAGTTGGCTGAGGGGCTGCCTTGGGCTTACTCGCATGTTGGAGTG GAGCTGGCTCTGGATCACAGGAACTCACCTTTCTTGAAACAAACGAGCGACCCGGCGTGCGCCCATAACTTGGAGGCTCATTTGCATTTGCTTGATGGGT ACCATGGAAAGGGGCACAGATTTGTACTAGCAAGTGGAAGGGACCCTGCGTTGGTAAACAAGGCATGTGATTTTTTGAAAGATCATCATCTGGTTCCACC AAACTGGAGGCAAGATGAGAACAAGGGTATGATAAGGAATAACGACGGTCGTTGGGTGCAACCTGAACGCCCAAAACTCGATGAACACCCTCTCGACACG CACGACCATCTCAGGAAATTAGGCCTAGCATCCGATCACTAA
AA sequence Show only first row Show all	>Potri.005G218500.1 pacid=42805367 polypeptide=Potri.005G218500.1.p locus=Potri.005G218500 ID=Potri.005G218500.1.v4.1 annot-version=v4.1 MANLSLSSTLQFPFKQDIFQSRKCSSVQLPSQNSQLGRSRSIDITGKTSTSAIPCVLSKTSESLTSIITELEKEQDHETNTNTKEPERKLADVWREIQGQ DDWVGLLDPMDPLLRSELIRYGEMAQACYDAFDFDPFSKYCGSCRFIRRRFLESLGMAHHGYEVTRYLYATSNIDLSNFFKKSRWPKVWSNKANWIGYVA VSDDETTKCLGRRDISIAWRGTVTHLEWISDLMDFLKPINGNKIPCPDPTVKVEYGFLDLYTDKDENCRFCKYSAREQILSEVKRLTEMYADEEMSITIT GHSLGSALAILSAYDIAETGLHVMQDGRALPVSVFSFSGPRVGNVRFKERIESLGVKVLRVVNVQDMVPKSPGLFFNEQVPPPLMKLAEGLPWAYSHVGV ELALDHRNSPFLKQTSDPACAHNLEAHLHLLDGYHGKGHRFVLASGRDPALVNKACDFLKDHHLVPPNWRQDENKGMIRNNDGRWVQPERPKLDEHPLDT HDHLRKLGLASDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06800		PLA-I{gamma}1	phospholipase A I gamma 1, alp...		Potri.005G218500 [exp]	0	1
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	1.73	0.9357
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Potri.018G086900 [exp]	4.47	0.8924
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.006G105300 [exp]	4.89	0.8946
AT2G15730			P-loop containing nucleoside t...		Potri.014G034300 [exp]	6.00	0.8941
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025566 [exp]	9.16	0.8785
					Potri.019G015800 [exp]	9.48	0.8661
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G022500 [exp]	12.00	0.8698	MYB173
AT3G20600		NDR1	non race-specific disease resi...		Potri.011G133900 [exp]	12.32	0.8523	Pt-NDR1.2
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.008G082100 [exp]	14.49	0.8772
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385400 [exp]	14.69	0.8682

Compare expression of checked genes

Potri.005G218500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.