Plant FIBer expression Database

Potri.005G218600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14050 632 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038375
[exp]
726 / 0 AT5G14050 707 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Lus10036236
[exp]
719 / 0 AT5G14050 707 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.005G218600.1 pacid=42805399 polypeptide=Potri.005G218600.1.p locus=Potri.005G218600 ID=Potri.005G218600.1.v4.1 annot-version=v4.1
ATGAGTTTGATATCTCAAAATGTTGGCTCAAAAAATAGAGTTAAGCGCTCAAATGCTGATGAGCCTGCTTTTTTGGGGGTGAATAATTCAAATGCTGATG
CTGATGAGCCTGCTTTTTTGGGGGTGAATAATTCAAATGCTGATGAGCCTGCTTTTTTGGGGGTGCATAAAGATGATGAGGGTAGAATAGAATCTGATTT
GGTCTTGTCAAAGACAAAGAAGAAACGTAAAGAAAGGGATGAGCTGCTAGAGAAGCAGTTGGAAATTGAAGAAGGAAAGGAAATGAAGAAGTTGGAGAAC
TTTTTGTTTGGTTCCCTATACTCTCCTGTTGAATTCGGGAAAGAGGAAGAGAAAAAGGATTCTCTTTCGTTCTTTTTGGACCGGTCTGTGGGCAGTGTAG
AGCCTGGTCATGAAGAAGATGTGGAATTGATGAAGGAAAGCGATATAGAAGAGGAACGGAAAGCTGTGTGGCTTGATGAGGAAGAGGAGAAGACCAAAGT
TAACATTGCTAAGGTTAATAGATTAAGGAAACTGAGGAAGGATGAGGATGAGAGTTTGATTTCTGGTTCTCAGTATGTTTCAAGGTTAAGGGCTCAGCAT
GCTAAGATGAATCCAGGCACTGATTGGGCCAGACTTGATTCGCAGTCTAGAAATGATGGTTTGTCCGATGATGAACTGTCCGATGAAGAAAATGGCATAG
TGTTGGCTCGTGGTTACAAGAATGATAATGCTTATGATGATATTCTCCGAACTAATGAAGATCTTGTGGTGAAGAGCAGAGCAAAACTGTTGCCTGGTCT
TCTTGAGTACTCAAGACTTGTGGATGCAAATGCTGAGGATCCTTCAAATGGTCCAATAAATTCGGTTCAGTTCCATCAGAATGCTCAGTTGTTACTTGCG
GCTGGATTAGACCGGAGGCTTAGGTTTTTTCAGATTGATGGTAAACGGAATACCAAAATACAAAGTATATTTATTGATGATTGCCCCATTAGAAAGGCAT
CATTTTTACCTGATGGTTCTAAGGTTATCATAGCTGGAAGAAGAAAGTTCTTTTATAGCTTTGATTTAGTAAAAGCTAAAGTTGATAAAATTGGCCCACT
TGTTGGAAGGGAGGAGAAGAGCTTGGAAGTTTTTGAGGTTTCCCCTGATTCTAGTATGATTGCTTTTGTGGGCAATGAAGGTTATATCCTTCTGGTGTCA
TCCAAAACAAAGGAACTAGTTGGGACTCTAAAGATGAATGGAACTGTTCGTTCATTAGCTTTTGCTGACGATGGGCAGCAATTACTGAGCCATGGAGGTG
ATGGGCAGGTCTACCACTGGGACTTGAGGACAAGGGCTTGCATCCACAAGGCTGTTGATGAGGGTTGTATTCATGGCACAGCTCTCTGCACTTCACCAAC
AAGAAATTTGTTTGCTGCTGGTTCAGACAGTGGTATAGTAAATATCTACAATAGAGATGAGTTTTTAGGTGGGAAGAAAAAACCTATCAAGACAATCGAG
AATTTGACCACCAAGGTGGACTTTTTGAAATTTAATAATGATGCTCAAATATTGGCCGTTTGTTCCCACATGAAGAAGAACAGTTTAAAGTTGATACATG
TCCCATCATTTACTGTCTTTTCTAACTGGCCTCCAGCAAACAGCGCCATACATTATCCCCGTTGTTTGGATTTCAGTCCTGGTGGAGGTTTCATGGCCAT
GGGAAATGCTGCCGGAAAAGTTCTGTTATACAAGTTGCATCATTATGACCATGCATAG
AA sequence
>Potri.005G218600.1 pacid=42805399 polypeptide=Potri.005G218600.1.p locus=Potri.005G218600 ID=Potri.005G218600.1.v4.1 annot-version=v4.1
MSLISQNVGSKNRVKRSNADEPAFLGVNNSNADADEPAFLGVNNSNADEPAFLGVHKDDEGRIESDLVLSKTKKKRKERDELLEKQLEIEEGKEMKKLEN
FLFGSLYSPVEFGKEEEKKDSLSFFLDRSVGSVEPGHEEDVELMKESDIEEERKAVWLDEEEEKTKVNIAKVNRLRKLRKDEDESLISGSQYVSRLRAQH
AKMNPGTDWARLDSQSRNDGLSDDELSDEENGIVLARGYKNDNAYDDILRTNEDLVVKSRAKLLPGLLEYSRLVDANAEDPSNGPINSVQFHQNAQLLLA
AGLDRRLRFFQIDGKRNTKIQSIFIDDCPIRKASFLPDGSKVIIAGRRKFFYSFDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSMIAFVGNEGYILLVS
SKTKELVGTLKMNGTVRSLAFADDGQQLLSHGGDGQVYHWDLRTRACIHKAVDEGCIHGTALCTSPTRNLFAAGSDSGIVNIYNRDEFLGGKKKPIKTIE
NLTTKVDFLKFNNDAQILAVCSHMKKNSLKLIHVPSFTVFSNWPPANSAIHYPRCLDFSPGGGFMAMGNAAGKVLLYKLHHYDHA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G14050 Transducin/WD40 repeat-like su... Potri.005G218600
[exp]
0 1
AT5G60990 DEA(D/H)-box RNA helicase fami... Potri.007G068800
[exp]
2.82 0.8362
AT3G16810 APUM24 pumilio 24 (.1) Potri.010G005600
[exp]
6.78 0.8221
AT1G63660 GMP synthase (glutamine-hydrol... Potri.003G128200
[exp]
7.21 0.7985
AT1G60640 unknown protein Potri.017G121000
[exp]
7.34 0.7563
AT5G07900 Mitochondrial transcription te... Potri.012G046800
[exp]
8.06 0.7723
AT3G13230 RNA-binding KH domain-containi... Potri.001G469200
[exp]
8.94 0.7924
AT4G26600 S-adenosyl-L-methionine-depend... Potri.001G369600
[exp]
9.79 0.8036
AT5G09270 unknown protein Potri.007G102600
[exp]
10.58 0.7715
AT5G02050 Mitochondrial glycoprotein fam... Potri.006G090700
[exp]
11.83 0.7968 Pt-SDH4.3
AT3G18600 P-loop containing nucleoside t... Potri.001G250700
[exp]
12.00 0.7602

Potri.005G218600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.