Plant FIBer expression Database

Potri.005G218650 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G218650.1 pacid=42802430 polypeptide=Potri.005G218650.1.p locus=Potri.005G218650 ID=Potri.005G218650.1.v4.1 annot-version=v4.1
ATGGTGGATCTGTGGCCGGGCATGGAGATCGGAGGAGAAGCTGTCGTGGCTGGCTGTTGTGGGGAGGAGCGGCTGCTGTTGTGGTGCTCGCTGGAGGCCG
GCGAGGAGCGGCTGCTGTTGTGGTGCTCGCTGGAGGCCGGCGTGGATGGAGAGAGAGCTGGATATGTAGGCTGTGGGCAGAAGCTGCCGCTGCTGGAGGT
CGGCTGCAGGGCGATTTGTGAGGGAGGAGCTGGAGAAGGAAGGCTCTGCTGGGTGCTGCCGGATGAAGAAGGCGCCGCTGCGGCTGGAGAAAGGAACAGC
TGA
AA sequence
>Potri.005G218650.1 pacid=42802430 polypeptide=Potri.005G218650.1.p locus=Potri.005G218650 ID=Potri.005G218650.1.v4.1 annot-version=v4.1
MVDLWPGMEIGGEAVVAGCCGEERLLLWCSLEAGEERLLLWCSLEAGVDGERAGYVGCGQKLPLLEVGCRAICEGGAGEGRLCWVLPDEEGAAAAGERNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G218650
[exp]
0 1
AT4G04650 RNA-directed DNA polymerase (r... Potri.011G086901
[exp]
5.00 0.8730
AT1G21280 unknown protein Potri.004G127101
[exp]
6.00 0.9149
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.001G129400
[exp]
7.14 0.8882 CYP89A27P
AT3G07020 UGT80A2, SGT UDP-glucosyl transferase 80A2,... Potri.002G238600
[exp]
8.06 0.8915
AT4G18780 LEW2, IRX1, ATC... LEAF WILTING 2, IRREGULAR XYLE... Potri.011G069600
[exp]
8.36 0.9029
AT4G34588 CPuORF2 conserved peptide upstream ope... Potri.009G119650
[exp]
9.32 0.8705
AT1G10330 Tetratricopeptide repeat (TPR)... Potri.018G003300
[exp]
9.79 0.8734
AT5G19610 GNL2 GNOM-like 2 (.1) Potri.018G075300
[exp]
9.94 0.9154
AT2G47480 Protein of unknown function (D... Potri.013G010600
[exp]
17.54 0.8627
AT3G19720 DRP5B, ARC5 Dynamin related protein 5B, AC... Potri.018G027001
[exp]
21.16 0.8698

Potri.005G218650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.