Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03030 395 / 4e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G27440 55 / 3e-08 UKL5 uridine kinase-like 5 (.1) AT4G26510 42 / 0.0004 UKL4 uridine kinase-like 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G071200 [exp] 49 / 3e-06 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.001G332100 [exp] 44 / 0.0001 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018767 [exp] 429 / 4e-145 AT3G54650 618 / 0.0 RNI-like superfamily protein (.1) Lus10022289 [exp] 46 / 3e-05 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00485 [poplar] [flax] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Potri.005G218700.5 pacid=42804857 polypeptide=Potri.005G218700.5.p locus=Potri.005G218700 ID=Potri.005G218700.5.v4.1 annot-version=v4.1 ATGGAGGTCTCTTTTTCATTATCTACAACCTCCGCCACCTATCTGCGTCCATCCACAGAGGCATTGCTATTTAGAAGGATTAAACTTCATCTGGAGCTTC CAATTTCATTGAATAGAAGAGATTCGCTGTCTTTGTTGACGCGACCTTGTTGCCTGGTTCACAAAGTAAACTCTATAAAGGTCTTATGTAGTCAAAAGAG AGAGATTCCTGTTGTTGAGGCCGGTTCCATGGATGAGATATATGATGCTTTAGCTATACGGCTTCTTCCTACAGCACCAGCAGCGTCGAATCCTAATTTC AAGTATATTGTGGCGTTGGCTGGTCCACCTGGTGCTGGAAAGAGCACTTTGGCTTCTGAAATAGTGCATCGTGTAAATAGGTTATGGCCACAAAAAGCTT CTTCATTTGATTCGCAAGTCAAGCCTCCGGATGTTGCTGCAGTTCTTCCCATGGATGGGTTTCATCTATATCGTTCCCAGCTTGATGCAATGGAGAATCC AGAGGAAGCCCATGCCAGAAGAGGAGCTCCATGGACATTTTCCCCAACCCTACTGCTTAGATGTCTGGAGAAGTTGAGGAACGAGGGGTCAGTTTATGCA CCATCTTTTGATCATGGTGTTGGAGATCCAGTAGAAGATGATATCTTTGTGAGTCTTCAGCATAAAGTGGTCATAGTTGAAGGAAATTATCTATTGTTGG AAGATGGGGCTTGGAAGGATGTGTCTTCAATGTTTGATGAGAAATGGTTTATTGATGTGGACATTGATACAGCAATGCAGCGAGTTTTAAAGAGACATAT TTCAACAGGGAAGCCTCCAGATGTTGCTAAGTGGCGGATAGAGTATAACGACCAGCCTAATGCAGAGCTCATTATCAAGTCGAAGAAAAATGCAGATTTA GTAATCAGGTCTATCGATTTCTGA
AA sequence Show only first row Show all	>Potri.005G218700.5 pacid=42804857 polypeptide=Potri.005G218700.5.p locus=Potri.005G218700 ID=Potri.005G218700.5.v4.1 annot-version=v4.1 MEVSFSLSTTSATYLRPSTEALLFRRIKLHLELPISLNRRDSLSLLTRPCCLVHKVNSIKVLCSQKREIPVVEAGSMDEIYDALAIRLLPTAPAASNPNF KYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPEEAHARRGAPWTFSPTLLLRCLEKLRNEGSVYA PSFDHGVGDPVEDDIFVSLQHKVVIVEGNYLLLEDGAWKDVSSMFDEKWFIDVDIDTAMQRVLKRHISTGKPPDVAKWRIEYNDQPNAELIIKSKKNADL VIRSIDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03030			P-loop containing nucleoside t...		Potri.005G218700 [exp]	0	1
AT3G23610		DSPTP1	dual specificity protein phosp...		Potri.010G033000 [exp]	6.63	0.9121
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G005000 [exp]	10.00	0.8649
AT2G35736			unknown protein		Potri.001G123000 [exp]	13.00	0.8847
AT5G05800			unknown protein		Potri.008G196901 [exp]	14.07	0.9040
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023101 [exp]	14.42	0.8990
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Potri.013G042100 [exp]	19.44	0.8812
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.005G235300 [exp]	20.00	0.8892
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Potri.019G083800 [exp]	21.07	0.8920	UBC.5
AT3G18670			Ankyrin repeat family protein ...		Potri.008G022900 [exp]	21.49	0.8913
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.001G436433 [exp]	22.09	0.8900

Compare expression of checked genes

Potri.005G218700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.