Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06780 690 / 0 GAUT6 galacturonosyltransferase 6 (.1.2) AT2G30575 651 / 0 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT5G47780 541 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 478 / 7e-162 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 452 / 2e-151 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G46480 357 / 2e-116 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT1G18580 353 / 5e-115 GAUT11 galacturonosyltransferase 11 (.1) AT3G25140 340 / 1e-109 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G20810 330 / 4e-106 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT3G02350 314 / 2e-99 GAUT9 galacturonosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001700 [exp] 531 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 473 / 5e-161 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.014G073800 [exp] 475 / 2e-160 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 473 / 9e-160 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 456 / 3e-153 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.019G108900 [exp] 343 / 2e-111 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.015G060800 [exp] 343 / 3e-111 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.002G246500 [exp] 342 / 3e-110 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.017G106800 [exp] 340 / 8e-110 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018773 [exp] 700 / 0 AT1G06780 639 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10014750 [exp] 699 / 0 AT1G06780 611 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10024859 [exp] 692 / 0 AT1G06780 630 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10033861 [exp] 657 / 0 AT1G06780 568 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10038739 [exp] 520 / 3e-178 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 473 / 1e-159 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 468 / 2e-158 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 469 / 3e-157 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 449 / 1e-145 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 407 / 2e-125 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.005G218900.1 pacid=42804741 polypeptide=Potri.005G218900.1.p locus=Potri.005G218900 ID=Potri.005G218900.1.v4.1 annot-version=v4.1 ATGAAGAAATTTCGTCGGTGGCAGAGGATTTTCTTACTCTCTTTGCTCTGTTTAACTGTCTTGGCTCCCATACTTTTCGTTTCTGTAGGGCGGAAAGAGT TGATTTCGGATTTATCAACTTTGAGATACAGGAGAGATTCTGTACAGCTTAATGCCATTGAGCAGGAAGAAGGTGAAGGTTTGAAAGGGCCGAAACTAGT GGTGTATGATGAGAAGGAACTGGGTTCTAGAATTAGTTACAGTACTTCGGAAGAGAATAATGATTCTAAGAAATATGGAAATATTGGAGAAATAGATCGA GGTTCAAAGAGATCTCAAAGAGGTGGAAACACGTCAATTCCTTTGGAAAGAACTAATCATGAAAGTAGAGAAGAAAATCGGCAGATTCCACAGGAAACAG TAACATCCAGGTCAGAAGCAAAGCTGCAGGGGCAGTCCAATCAAGCAACAGTTCGACATGATCAGAACATGCGATCTCCAGTCCGGATATTTACTGATGA GAAGGTAAAGCAGATGAAAGATGATCTGATTAGAGCAAAGGCATACTTGAGTATGACACCACCAGGCAGTAACTCTCACTTAGTAAAAGAGTTGAGATTG CGAATCAAAGAATCTGAACGAGCTGTTAGTGCAGCCAACAAGGACTCAGATTTATCAAGGAGTGCACTACAGAAAAAGAGATCCTTGGAGGTTACCTTAT CAAAAGCCAGTCGTGTTTTCCCGGACTGCTCGGCCATGGCTTTGAAGCTCCGTGCCATGACTTACAATGCTGAAGAACAGGTTCGAGCACAGAAGAATCA AGCAACATATCTTGTTCAGCTTTCTGGAAGGACTACGCCAAAAGGCTTACACTGCCTTTCTATGCGGTTGACAGCTGAATATTTTGCCTTGTCACCTGAG GAAAGACAGCTACCTAACCAACAAAGGGTGCATGATGCAGATCTTTATCACTATGCTGTTTTCTCTGATAATGTTCTAGCCTGTGCTGTGGTTGTCAATT CCACTGTCTCCTCTGCCATGGAGCCAGAGAAAATTGTTTTTCACATAGTGACTGATTCTCTCAATCTCCCAACAATCTCAATGTGGTTCTTATTGAATCC TCCTGGCAAAGCTACAATTCAGATCCAGAGCTTAGTCGATTTCAAAGGGTTGTCCGCTAATTACAATTCAACATTGAAGCAACTAAATTCCCGTGATTCA AGATATACTTCTGCACTGAACCATCTTCGTTTCTATCTACCAGATGTCTTCCCCCAGCTGAATAAGATTGTTCTGTTTGACCATGATGTGGTAGTGCAAA AGGATCTAGCTGGCCTTTGGAGTCTTAATATGAAAGGAAAAGTCATTGGAGCAGTGGACACGTGCCGTGAAGGTGAACCTTCATTTCGCCGGATGGATAA GTTCATCAATTTCTCAGATCCATTTGTGATTAAGAGGTTTGATGCCAAGGCATGCACATGGGCATTTGGAATGAATTTGTTTGATCTGCAAGAGTGGAGG AGGCATAAATTAACTGCTCTCTACAATAAATACTTGCAACTGGGCCACACAAGGCAATTGTGGAAAGCGGGTAGTTTGCCTTTAGGTTGGGCCACTTTCT ACAACCGGACGGTTATTCTGGACAGGAGATGGCATAAACTCGGACTTGGCCATGAGGCGGGTGTTGGACACGACGGTGTTGAGCAGGCAGCGGTATTACA CTATGATGGAGTCATGAAACCATGGCTGGATATTGGTATTGGAAAGTACAAGAGTTACTGGAGCAAACATATCAACTACGACCATCCCTACTTACAACAG TGCAATATCCACGAGTAA
AA sequence Show only first row Show all	>Potri.005G218900.1 pacid=42804741 polypeptide=Potri.005G218900.1.p locus=Potri.005G218900 ID=Potri.005G218900.1.v4.1 annot-version=v4.1 MKKFRRWQRIFLLSLLCLTVLAPILFVSVGRKELISDLSTLRYRRDSVQLNAIEQEEGEGLKGPKLVVYDEKELGSRISYSTSEENNDSKKYGNIGEIDR GSKRSQRGGNTSIPLERTNHESREENRQIPQETVTSRSEAKLQGQSNQATVRHDQNMRSPVRIFTDEKVKQMKDDLIRAKAYLSMTPPGSNSHLVKELRL RIKESERAVSAANKDSDLSRSALQKKRSLEVTLSKASRVFPDCSAMALKLRAMTYNAEEQVRAQKNQATYLVQLSGRTTPKGLHCLSMRLTAEYFALSPE ERQLPNQQRVHDADLYHYAVFSDNVLACAVVVNSTVSSAMEPEKIVFHIVTDSLNLPTISMWFLLNPPGKATIQIQSLVDFKGLSANYNSTLKQLNSRDS RYTSALNHLRFYLPDVFPQLNKIVLFDHDVVVQKDLAGLWSLNMKGKVIGAVDTCREGEPSFRRMDKFINFSDPFVIKRFDAKACTWAFGMNLFDLQEWR RHKLTALYNKYLQLGHTRQLWKAGSLPLGWATFYNRTVILDRRWHKLGLGHEAGVGHDGVEQAAVLHYDGVMKPWLDIGIGKYKSYWSKHINYDHPYLQQ CNIHE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Potri.005G218900 [exp]	0	1
AT5G02970			alpha/beta-Hydrolases superfam...		Potri.006G131300 [exp]	8.94	0.8275
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	13.71	0.8420	SHMT3
AT3G60380			unknown protein		Potri.014G045300 [exp]	17.14	0.8228
AT3G52790			peptidoglycan-binding LysM dom...		Potri.010G231000 [exp]	20.00	0.8268
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	21.90	0.8379
AT3G05270			Plant protein of unknown funct...		Potri.007G098500 [exp]	22.49	0.8407
AT1G19835			Plant protein of unknown funct...		Potri.002G024400 [exp]	26.00	0.8078
AT1G07120			unknown protein		Potri.001G279000 [exp]	28.14	0.8247
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G066100 [exp]	31.17	0.7800
AT2G41770			Protein of unknown function (D...		Potri.016G055700 [exp]	32.71	0.8147

Compare expression of checked genes

Potri.005G218900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.