Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 400 / 3e-137 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 368 / 1e-124 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 101 / 4e-23 RING/U-box superfamily protein (.1) AT5G13250 80 / 3e-16 RING finger protein (.1) AT1G28080 61 / 5e-10 RING finger protein (.1) AT1G03770 47 / 2e-05 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT5G44280 47 / 3e-05 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G61140 44 / 0.0002 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G18660 43 / 0.0003 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044100 [exp] 675 / 0 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.013G042000 [exp] 402 / 2e-137 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 378 / 2e-128 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 350 / 2e-117 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 301 / 7e-99 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 155 / 7e-44 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.003G164800 [exp] 81 / 3e-16 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.001G062700 [exp] 78 / 2e-15 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.004G137200 [exp] 71 / 2e-13 AT5G13250 92 / 9e-21 RING finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014749 [exp] 437 / 3e-151 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 430 / 8e-149 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 272 / 2e-87 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10003261 [exp] 273 / 7e-87 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 270 / 1e-86 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10006558 [exp] 247 / 5e-78 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10039845 [exp] 50 / 2e-06 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10018609 [exp] 50 / 2e-06 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10002575 [exp] 45 / 0.0001 AT5G13250 90 / 9e-20 RING finger protein (.1) Lus10019075 [exp] 44 / 0.0003 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.005G219000.6 pacid=42803874 polypeptide=Potri.005G219000.6.p locus=Potri.005G219000 ID=Potri.005G219000.6.v4.1 annot-version=v4.1 ATGGGAAATCAGAATCATCAGCATCGGGTGGTGAAAGTGAGGAGAGAAACAATTGAAGCATGCATGACATGTCCTCTCTGCAATAAGTTACTTAGAGACG CCACTACCATATCTGAATGTCTACATACGTTTTGCAGGAAGTGTATATATCAGAGGATATCAGATGAAGGACTAGATAGCTGCCCAATATGCAATATCAA TCTGGGTTGTATTCCATTGGAAAAATTAAGGCCAGATCACAATTTGCAAGATGTGAGGTCCAAGATTTTCCCATACAAAAGAAGAAAGGTAGAGGCACCT GAAGTTGTAGAGTCAGTTACATTACCAGTTATAAGAAGAAAGGAGAGGTCACTCTCATCATTGGTAGTCAGCACCCCTAAAGTTTCCACACAGACTACCA CAACAGGAAGAAGAACAAAACCTTTTCCAAGAAAGGCTGCTGCTTTACGAGGTTCAGGTTTTTCAATTGAGAAACCCATTAAAAAGGAACATGATCGTGC TGAAGATAGTCCAGAGAGCTCAAGTTCACCTGAAACTCCGAAAAAGTTCAATCAAAATACACGGCAGAATTCTTCCTCTGCCGAACCTAGTCAACCTGCT CCTGATGATGAAGCAGAGAATGGGGCCGAACCAAGGGATGGGAAATCAGATCTCTGGCAACCTTTAAATTTTTTGGTGGAAGTTGCAAACAGAACCAAGT CATTCAAGTCTATTCCACAAGTTAATGATGCTAAATTAGAATCACGACCTGTCCATGAAAATGAACCTCAAGTGCATAAAACCAAATTTAAGGAGAACAA AGACAAATCAAAAGTTAAGGATGAAAAGAATAATATCGATAATGTTTCTGAAGGAACAGTGGAACCAAAAAGGTTGCGCAGGATTCGTCGAAAAAAGGCA GCGTTTAATGACGTTTCAGGCATTTCATCCCCAGCGGTGCTGCACACTGCTGCTGCAAAGCAAGAAAGAAGAAGTGGCCCTGTTTGGTTTTCACTATTGG CTTCTGAAGAACAGGAAGGAGATGCACCTTTGCCACAAATTCCTTCAAGTTATTTAAGGCTAAAGGATGGAAATGTACCTGTTTCTTTCATCCAGAAGTA CTTGGTGAAGAAGCTAGACCTCACTAGTGAAGTTGAGGTTGAGATCAGATGCATGGGAAGACCAGTGATCCCTACATTACTATTGTGTAATTTAGTTGAT CAGTGGCTACAGGCAGCACCAAAGCCAGAACAGGTTCCAGTGTCTGCTGGTTCCTCGGCAAAGGATTTTGTGATGGTGCTGGCCTATGCTCGAAAGGTCC CAAACCCATAA
AA sequence Show only first row Show all	>Potri.005G219000.6 pacid=42803874 polypeptide=Potri.005G219000.6.p locus=Potri.005G219000 ID=Potri.005G219000.6.v4.1 annot-version=v4.1 MGNQNHQHRVVKVRRETIEACMTCPLCNKLLRDATTISECLHTFCRKCIYQRISDEGLDSCPICNINLGCIPLEKLRPDHNLQDVRSKIFPYKRRKVEAP EVVESVTLPVIRRKERSLSSLVVSTPKVSTQTTTTGRRTKPFPRKAAALRGSGFSIEKPIKKEHDRAEDSPESSSSPETPKKFNQNTRQNSSSAEPSQPA PDDEAENGAEPRDGKSDLWQPLNFLVEVANRTKSFKSIPQVNDAKLESRPVHENEPQVHKTKFKENKDKSKVKDEKNNIDNVSEGTVEPKRLRRIRRKKA AFNDVSGISSPAVLHTAAAKQERRSGPVWFSLLASEEQEGDAPLPQIPSSYLRLKDGNVPVSFIQKYLVKKLDLTSEVEVEIRCMGRPVIPTLLLCNLVD QWLQAAPKPEQVPVSAGSSAKDFVMVLAYARKVPNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.005G219000 [exp]	0	1
AT5G18150			Methyltransferase-related prot...		Potri.013G058200 [exp]	7.14	0.6589
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Potri.001G336900 [exp]	124.69	0.5466
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.016G110800 [exp]	203.99	0.4980

Compare expression of checked genes

Potri.005G219000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.