Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04710 221 / 9e-68 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G03430 73 / 1e-14 Ankyrin repeat family protein (.1) AT5G37500 58 / 7e-09 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT4G27780 57 / 7e-09 ACBP2 acyl-CoA binding protein 2 (.1) AT5G40160 54 / 4e-08 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT3G02850 53 / 2e-07 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G57740 52 / 4e-07 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT2G26650 52 / 6e-07 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT5G66055 51 / 7e-07 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT2G25600 51 / 8e-07 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042300 [exp] 246 / 1e-77 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G054800 [exp] 235 / 4e-73 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.010G161300 [exp] 58 / 2e-09 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.018G121200 [exp] 58 / 5e-09 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.001G287000 [exp] 57 / 9e-09 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.001G238800 [exp] 56 / 3e-08 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.009G030000 [exp] 56 / 3e-08 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.006G061800 [exp] 55 / 5e-08 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.012G017700 [exp] 53 / 2e-07 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003260 [exp] 232 / 7e-72 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10006559 [exp] 231 / 1e-71 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10016561 [exp] 62 / 2e-10 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10040829 [exp] 62 / 2e-10 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10014522 [exp] 56 / 2e-08 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10012455 [exp] 53 / 2e-07 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10015687 [exp] 52 / 4e-07 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 52 / 4e-07 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10005910 [exp] 52 / 5e-07 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1) Lus10022382 [exp] 52 / 5e-07 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.005G219201.1 pacid=42803945 polypeptide=Potri.005G219201.1.p locus=Potri.005G219201 ID=Potri.005G219201.1.v4.1 annot-version=v4.1 ATGGGAGATGGTTTAGAGGAAACAGTAGCAAACATCAAGGATTTGAATGGTCGAACTGCACTGCATTTTGCTGCAGTAGGAGGAAGGGCTCATGTTTGCC GGTACCTTACGGCAGAAGCTAAACTAGATGTTAATGCGAGAGATGGGAAAGGTGAAACTCCTTTGCACAATTCTATTACAGCAGATCGTTATCCAACCGC AGTTCATCTTCTTGAGAATGGGGCAAACCCGAATGCAGCAACCGACAGCGGACTCACTCCTCTCCATTACGCTGCAAAGTCAGGGTTGAAGAAATTTCTA TTACTGCTGATTTTGAAAGGTGCTGAAGTGGATGCAAAAGCTGATTCTGGCACGCCATTGAAGTGGGCTGCAATTCATGGTCAGAAAAAAGCTGTTAAAA TCTTGTTGGATAATCATGCCGATCCAAACATGATTTTTGATTTCATTCATTCCCCCTTGGTGGCATCCATTTTGGCTTCGTCATTTGACAGTGTAAAGCT ATTGCTTCAGGCTGGAGCTGATCCAAACACGTGCTCTCTTGGGATGACACCGTTAGAAGTGGCAGCTTCTAACGGGGAGACGCAACTTGGTTTAACACCA GTTGAAGTTGCTGCTTTAGGTGGTCATATTAAGGATGTCAGAATTCTCTTGCCAGTTACATTTCCTATTCCTAAAGTTACTGACTGGAGCTTTGATGGAA TTATGAAGTACGTTAACTCAGAAAAGTTCGAAAGAAAGAGGAAACTCAGAAAATTGGAGCATTTTTTTCTGTCAACATCCAAGGGAGAAGATGCATTCAT GAGAAAGGATTATGTTAACGCCATCCGTTGGTATACGGAGGCTGTTGACACAGAAGCAGCTCTCTTATCTACTCACTTGAATGAAGGTGATCTTGCCTTG AGAGATGCTATAGGTAGCCGGATGGTGCTGCCTTCCTTGCCAAAAGCACACTATGCTGAAGGAGTTGCCTGGAATTTATCAAAAGATTTCAAGCGTGCAG CAGAATCTTTTCTTACTGGTATGCGGCTCGATCGAAAAAACAGGCAGCTAAATGATCTTTTCAGTCTAGTCCTTCTAGACTCAGCCATTTCTCATCAATT TAGTTTGTCCCACAAACCCAAGAGGTTTCCCACAACTCTTTCAATATTGTAA
AA sequence Show only first row Show all	>Potri.005G219201.1 pacid=42803945 polypeptide=Potri.005G219201.1.p locus=Potri.005G219201 ID=Potri.005G219201.1.v4.1 annot-version=v4.1 MGDGLEETVANIKDLNGRTALHFAAVGGRAHVCRYLTAEAKLDVNARDGKGETPLHNSITADRYPTAVHLLENGANPNAATDSGLTPLHYAAKSGLKKFL LLLILKGAEVDAKADSGTPLKWAAIHGQKKAVKILLDNHADPNMIFDFIHSPLVASILASSFDSVKLLLQAGADPNTCSLGMTPLEVAASNGETQLGLTP VEVAALGGHIKDVRILLPVTFPIPKVTDWSFDGIMKYVNSEKFERKRKLRKLEHFFLSTSKGEDAFMRKDYVNAIRWYTEAVDTEAALLSTHLNEGDLAL RDAIGSRMVLPSLPKAHYAEGVAWNLSKDFKRAAESFLTGMRLDRKNRQLNDLFSLVLLDSAISHQFSLSHKPKRFPTTLSIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Potri.005G219201 [exp]	0	1
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Potri.015G022800 [exp]	11.57	0.7922	10
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027800 [exp]	22.71	0.7844
AT4G23280		CRK20	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027600 [exp]	24.49	0.7775
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086200 [exp]	31.85	0.7741
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027900 [exp]	35.07	0.7506
AT3G21410			F-box and associated interacti...		Potri.005G114900 [exp]	39.89	0.7730
					Potri.014G065200 [exp]	41.55	0.7426
AT3G11930			Adenine nucleotide alpha hydro...		Potri.006G198200 [exp]	42.07	0.7382
AT5G35405			Protein of unknown function (D...		Potri.002G229600 [exp]	47.34	0.7382
AT5G35405			Protein of unknown function (D...		Potri.002G229650 [exp]	48.57	0.7382

Compare expression of checked genes

Potri.005G219201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.