Plant FIBer expression Database

Potri.005G220000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30630 803 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
AT1G06750 801 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
AT1G04280 574 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G043000
[exp]
979 / 0 AT1G06750 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Potri.008G162000
[exp]
617 / 0 AT1G04280 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.008G162400
[exp]
568 / 0 AT1G04280 491 / 4e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033855
[exp]
829 / 0 AT2G30630 804 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10014744
[exp]
811 / 0 AT2G30630 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10041167
[exp]
546 / 0 AT2G30630 524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10021885
[exp]
452 / 1e-155 AT2G30630 442 / 7e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10021226
[exp]
416 / 2e-143 AT1G04280 445 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10022217
[exp]
397 / 2e-136 AT1G04280 416 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10021884
[exp]
244 / 4e-77 AT2G30630 224 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10021225
[exp]
64 / 3e-11 AT1G06750 66 / 3e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF06414 Zeta_toxin Zeta toxin
Representative CDS sequence
>Potri.005G220000.3 pacid=42804670 polypeptide=Potri.005G220000.3.p locus=Potri.005G220000 ID=Potri.005G220000.3.v4.1 annot-version=v4.1
ATGCCGAAAGATTACACCAGCAAACAAACCTACCTTATCATGGCGGCCTCTTCAATAGGCTTGATCTTAGCGGCTGTTCATTATCGTCTCTGGAAGTCGA
GGGATCGAAAGATCATCCCACGCCTAAGACCATCAGAAGCTGGCCGTGCCGAGAAGCTTGAGAGCTTCCCCCATTATGTAGCAAGGCAAATGGGGTTTGC
AGATAGGAGAGAATGCCCGCGTCTATGCAGGTTGGCTGCTGAATACATCCGAAAATGTGAAGGGTGTGAGGAGGACATTTATGCATTCTTTGCTCAAGAA
CCTGATGCCGATTCACTCTATGTAACGCTAGTAGAGGAGTTTGAGCGGTGCATTCTTAGTTATTTTGCATTTCATTGGAGCCATGCTGATCTTTTGATTA
GTCAGGTTTTGAGTTCTGATCCGGAGCCCAAAAGGAAGCTCAAACAAATTGTCATGGCTGCAACTCGGGAACAGACGTTTGAGAGGGTGACAAAAGATCT
AAAGGTTGCTAGGGTGTTCAGTACATTGCTGGAGGAAATGAAAGCTATGAGACTTGCATCAAATGATGACTCGCAATGTACAGAGGTGATGGCCCCAGTG
GCCCACAGTGATAGAAGTCCAGTCCTCCTCTTCATGGGTGGTGGCATGGGAGCTGGGAAGAGCACGGTGCTCAAGGACATTCTCAACGAGCCATTCTGGG
CAGGAGCAGCAGGGAATGCAGTGGTTATCGAGGCCGATGCCTTCAAAGAATCAGATGTCATTTACAGAGCCCTGAGCTCTCGAGGACATGTTGACATGAT
CCATACGGCTGAACTGGTGCACCGGTCGTCTACAGATGCAGCATCTTCTCTCCTGGTGACAGCATTGAATGATGGGCGGGATGTAATTATGGATGGCACT
CTCTCGTGGGTACCATTTGTTGTGCAGACAGTAACAATGGCCCGAAATGTCCACCGCCGACGTTATCGCATGGGAGCTGGTTATAAGGTCGGTAAAGATG
GGGCTGTAACTGAGGACTACTGGGAGCAAATTGATGAAGAACAATCACTACAAGAAGGATCCAAAAAAAGAAAACCATACAGGATAGAGCTGGTCGGGGT
GGTTTGCGATGCTTATTTAGCTGTTGTCAGAGGTATAAGGAGAGCTATAATGTGTAGAAGAGCTGTTAGGGTGCAATCACAACTGAAATCCCACAAGAGA
TTTGCAAATGCATTTCTAACATTCTGCCATCTGGTTGACAATGCCAGGCTTTATTGCACCAATGCCCTGGAAGGTCCACCTAAGTTGATAGGATGGAAAG
ACAAGGACAAGACTCTGCTGGTTGATCCAGATGAAATAGACTGTTTAAAAAGAGTGGGCAGCTTGAACGAGGAAGCAGAATCTATTTATGAACTTTACAA
GCACCCTAATCCAGCTTGTGAAGATGGTTCGATTTGGAAAGACATTGTATTATCACCATCAAGGTTAAACATTCAAAAGGAGTTAAAGTATTCTATCCAG
AAAGTTGAAAGACAATGA
AA sequence
>Potri.005G220000.3 pacid=42804670 polypeptide=Potri.005G220000.3.p locus=Potri.005G220000 ID=Potri.005G220000.3.v4.1 annot-version=v4.1
MPKDYTSKQTYLIMAASSIGLILAAVHYRLWKSRDRKIIPRLRPSEAGRAEKLESFPHYVARQMGFADRRECPRLCRLAAEYIRKCEGCEEDIYAFFAQE
PDADSLYVTLVEEFERCILSYFAFHWSHADLLISQVLSSDPEPKRKLKQIVMAATREQTFERVTKDLKVARVFSTLLEEMKAMRLASNDDSQCTEVMAPV
AHSDRSPVLLFMGGGMGAGKSTVLKDILNEPFWAGAAGNAVVIEADAFKESDVIYRALSSRGHVDMIHTAELVHRSSTDAASSLLVTALNDGRDVIMDGT
LSWVPFVVQTVTMARNVHRRRYRMGAGYKVGKDGAVTEDYWEQIDEEQSLQEGSKKRKPYRIELVGVVCDAYLAVVRGIRRAIMCRRAVRVQSQLKSHKR
FANAFLTFCHLVDNARLYCTNALEGPPKLIGWKDKDKTLLVDPDEIDCLKRVGSLNEEAESIYELYKHPNPACEDGSIWKDIVLSPSRLNIQKELKYSIQ
KVERQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06750 P-loop containing nucleoside t... Potri.005G220000
[exp]
0 1
Potri.014G023301
[exp]
5.91 0.7548
AT3G12890 ASML2 activator of spomin::LUC2 (.1) Potri.005G097700
[exp]
8.71 0.7258
Potri.002G006501
[exp]
16.43 0.6785
AT1G54490 ATXRN4, XRN4, E... ETHYLENE INSENSITIVE 5, ACC IN... Potri.013G035600
[exp]
24.89 0.7118 XRN4.2
AT3G18290 BTS, EMB2454 embryo defective 2454, BRUTUS,... Potri.010G122200
[exp]
38.53 0.7086
AT1G17230 Leucine-rich receptor-like pro... Potri.011G139700
[exp]
39.94 0.6956
AT1G31810 AFH14 Formin Homology 14 (.1) Potri.003G103800
[exp]
42.33 0.7170
AT2G18350 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, hom... Potri.005G122500
[exp]
46.82 0.6589
AT2G22840 GRF ATGRF1 growth-regulating factor 1 (.1... Potri.007G007100
[exp]
52.96 0.6487
AT5G40100 Disease resistance protein (TI... Potri.006G282800
[exp]
55.30 0.6089

Potri.005G220000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.