Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06730 558 / 0 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 75 / 2e-14 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 74 / 3e-14 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 73 / 7e-14 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06030 70 / 5e-13 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 70 / 6e-13 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 69 / 1e-12 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 66 / 3e-11 pfkB-like carbohydrate kinase family protein (.1) AT1G17160 43 / 0.0004 pfkB-like carbohydrate kinase family protein (.1.2) AT1G50390 41 / 0.0004 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042700 [exp] 887 / 0 AT1G06730 546 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 78 / 2e-15 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 75 / 1e-14 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 74 / 3e-14 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 70 / 7e-13 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 70 / 7e-13 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 67 / 6e-12 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 62 / 3e-10 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024866 [exp] 639 / 0 AT1G06730 552 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10018778 [exp] 624 / 0 AT1G06730 536 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 77 / 4e-15 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 76 / 8e-15 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 74 / 5e-14 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 72 / 2e-13 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 70 / 1e-12 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 61 / 8e-10 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 61 / 1e-09 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 56 / 2e-08 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.005G220400.2 pacid=42803312 polypeptide=Potri.005G220400.2.p locus=Potri.005G220400 ID=Potri.005G220400.2.v4.1 annot-version=v4.1 ATGCATAACTACACCGTAACTCTCAAATCTCCACTCCCTTACCATGCACCTCCTTCCCACCCTATCTTCTCTCTCCCTCTTAACCCTAGACAGTTTGTCC TCCCTTTATCCCCTCAAAAAACTGGAGGATCCATCTACCACAACCCCGTTTTCATCTGTAAAGGAACCCAACTATCCGTCCCCAGTCATGGCTCTGCTTC GCTTGGACCTTCAAACGGGAACGGTGCTGCCGTTCACGACTGGAAAGTGAGGAGTGTTGGTATCGAAAACATTGATGTTGCCACCCTGGGAAATCTCTGT GTTGATATTGTTCTTAATGTTCCAAAATTGCCCCCTCGTTCTCGTGAGGCTAGTTTTGCTTATATGCAAGAGCTGTCCAAATCCCCTCCTGATAAGAAAT ACTGGGAAGCTGGAGGTAACTGCAATATGGCTATAGCAGCTGCAAGATTGGGACTTCATTGCGCCACGATAGGTCACGTGGGTGATGAAATATATGGGCA GTTTTTGCTTGATGTGCTTCGTGAGGAGGGGATTAGTATGGTTGGGATGAGTGAAGATGGTGATATTGTTGATAGTTCTAATGCTTCATATGAGACCCTT TTGTGTTGGGTTCTTGTTGACCCTTTGCAAAGACATGGATTTTGTAGTCGAGCAGATTTCTGCGAGGACCCTGCATTTAGCTGGATGACTAAATTAACAG AAGAAGTAAAGATGGCTATTAAACAGTCAAAGATCCTGTTCTGTAATGGTTATGGATTTGATGAGCTTTCCCCAGCTCTGATAATGTTAGCTCTAGATTA TGCTGTTGAAGTTGGAACATCTGTTTTCTTTGATCCTGGACCACGTGGAAAGAGTCTTTTGACTGGAACACCTGAAGAACGACAGGCTTTAAGCCATTTG TTGAAGATGAGTGATGTTCTTCTTCTAACATCTGATGAGGCTGAGTCATTGACTGGAATAGGAAACCCAATACTGGCAGGGCAAGAATTGCTTAAAAATG GGATACGCACAAAATGGGTGATCATTAAAATGGGTTCGAGGGGCTCGATTCTAGTTACCATGTCAAGTATATCCTGTGCACCTGCATTCAAGGTGAATGT CATTGACACTGTTGGATGTGGAGATAGTTTCGTAGCTGCTATTGCATTTGGTTATATCCATAATATACCATTGGTAAATACATTAGCAATTGCAAATGCA GTAGGTGCTGCAACTGCCATGGGCTGTGGCGCTGGCCGTAATGTGGCTACCTTGGAGAAAGTAATTGAACTCATGAGAGCATCAAATATCAATGAGGATG ATGAATTCTGGAATGAACTAGTAAAAGATATGGATACTGGAGAAATCACGTTTCTGTCAAAAATGGTCATAAATGGAAGGAACAATCAAGTAAACCATGT CGCTCTACAAAAAGTGGTTTCTGAACTGCTCCCAAAGCTCGAAGATAATAGGTTAGAGGGAAAAGTGGCTTCTTGA
AA sequence Show only first row Show all	>Potri.005G220400.2 pacid=42803312 polypeptide=Potri.005G220400.2.p locus=Potri.005G220400 ID=Potri.005G220400.2.v4.1 annot-version=v4.1 MHNYTVTLKSPLPYHAPPSHPIFSLPLNPRQFVLPLSPQKTGGSIYHNPVFICKGTQLSVPSHGSASLGPSNGNGAAVHDWKVRSVGIENIDVATLGNLC VDIVLNVPKLPPRSREASFAYMQELSKSPPDKKYWEAGGNCNMAIAAARLGLHCATIGHVGDEIYGQFLLDVLREEGISMVGMSEDGDIVDSSNASYETL LCWVLVDPLQRHGFCSRADFCEDPAFSWMTKLTEEVKMAIKQSKILFCNGYGFDELSPALIMLALDYAVEVGTSVFFDPGPRGKSLLTGTPEERQALSHL LKMSDVLLLTSDEAESLTGIGNPILAGQELLKNGIRTKWVIIKMGSRGSILVTMSSISCAPAFKVNVIDTVGCGDSFVAAIAFGYIHNIPLVNTLAIANA VGAATAMGCGAGRNVATLEKVIELMRASNINEDDEFWNELVKDMDTGEITFLSKMVINGRNNQVNHVALQKVVSELLPKLEDNRLEGKVAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.005G220400 [exp]	0	1
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Potri.010G038500 [exp]	2.00	0.9773
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Potri.019G100800 [exp]	3.74	0.9606	Pt-RMA1.1
AT3G59040			Tetratricopeptide repeat (TPR)...		Potri.001G220300 [exp]	4.24	0.9732
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Potri.013G090900 [exp]	4.24	0.9733
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	4.89	0.9562
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.010G022400 [exp]	7.07	0.9680
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Potri.018G024300 [exp]	7.21	0.9607
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G224900 [exp]	9.79	0.9664
AT5G01590			unknown protein		Potri.016G123900 [exp]	12.12	0.9577
AT5G07670			RNI-like superfamily protein (...		Potri.001G125800 [exp]	12.40	0.9575

Compare expression of checked genes

Potri.005G220400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.