Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19540 414 / 1e-146 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT3G24430 185 / 1e-54 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) AT5G50960 141 / 2e-39 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT5G24020 51 / 3e-07 ARC11, ATMIND1, MIND ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042600 [exp] 556 / 0 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.018G076600 [exp] 180 / 1e-52 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Potri.001G336900 [exp] 127 / 3e-34 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1) Potri.004G080100 [exp] 48 / 4e-06 AT5G24020 457 / 9e-163 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018779 [exp] 479 / 1e-170 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10024867 [exp] 472 / 1e-167 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10043252 [exp] 181 / 7e-53 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019395 [exp] 154 / 3e-43 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019468 [exp] 141 / 1e-41 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10027463 [exp] 130 / 3e-35 AT5G50960 573 / 0.0 nucleotide binding protein 35 (.1) Lus10039219 [exp] 127 / 4e-34 AT5G50960 566 / 0.0 nucleotide binding protein 35 (.1) Lus10011951 [exp] 112 / 3e-30 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10025895 [exp] 106 / 2e-27 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10038843 [exp] 45 / 4e-05 AT5G24020 501 / 3e-180 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01656 [poplar] [flax] CbiA CobQ/CobB/MinD/ParA nucleotide binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G220500.6 pacid=42802920 polypeptide=Potri.005G220500.6.p locus=Potri.005G220500 ID=Potri.005G220500.6.v4.1 annot-version=v4.1 ATGAAAGGATTCTTGGGACCTTTGAGCCGGCTTGGAAGTATTAGGAACTACTCAGGGACGTTTAAGAGATCACAATTGCGGCTTGAAGGGGTGAAGGATG TTATTGCTGTTGCTTCTGGTAAAGGTGGCGTTGGCAAATCCACCACTGCGGTTAACTTGGCTGTTGCACTTGCTATTAAGTGCCAACTGAAGGTGGGCCT GCTTGACGCTGATGTTTATGGACCATCTGTTCCTATGATGATGAAGATTGACAGGAAGCCAGATATCACTGAAGATAAGAAGATGATTCCAATAGAGAAC TATGGAGTTAAGTGTATGTCAATGGGATTTCTTGTAGAGAAGGATGCCCCTATCGTATGGAGAGGTCCCATGGTGATGAGTGCTCTTGTGAAAATGACTA GGGGAGTTGATTGGGGAAATCTTGATATTCTTGTGGTGGATATGCCCCCTGGTACTGGCGACGCACAACTAACTATGACCCAAAATCTGCAACTATCTGG TGCATTGATTGTTTCAACTCCACAAGATATTGCTTTGTTGGATGCTCGTCGAGGAGCTAATATGTTCTCTAAAGTTGGCGTTCCTATTTTGGGATTTGTA GAGAACATGAGTTTCTTCAAATGCCCACATTGTGGTGAACCCTCATTCATTTTTGGGAAAGGAGGAGCTAGAAATGCAGCTGCTTCAATGGGTCACAACT TTCTTGGTGAGATACCGTTAGAAGTGGACGTCAGAAAAGGTTCTGATGAAGGCATCCCTGTAGTGATTTCAGCACCTGATTCTGCGATCTCCAAAGCATA TGGTGATACAGCACAAAATGTTGTCAACAAACTTGAGGAATTGGCAAAGGAACCATCTCTCCATCCAGAGATTAATCTGTAA
AA sequence Show only first row Show all	>Potri.005G220500.6 pacid=42802920 polypeptide=Potri.005G220500.6.p locus=Potri.005G220500 ID=Potri.005G220500.6.v4.1 annot-version=v4.1 MKGFLGPLSRLGSIRNYSGTFKRSQLRLEGVKDVIAVASGKGGVGKSTTAVNLAVALAIKCQLKVGLLDADVYGPSVPMMMKIDRKPDITEDKKMIPIEN YGVKCMSMGFLVEKDAPIVWRGPMVMSALVKMTRGVDWGNLDILVVDMPPGTGDAQLTMTQNLQLSGALIVSTPQDIALLDARRGANMFSKVGVPILGFV ENMSFFKCPHCGEPSFIFGKGGARNAAASMGHNFLGEIPLEVDVRKGSDEGIPVVISAPDSAISKAYGDTAQNVVNKLEELAKEPSLHPEINL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Potri.005G220500 [exp]	0	1
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	8.71	0.8987
AT5G46295			unknown protein		Potri.004G131200 [exp]	11.22	0.8636
AT4G14600			Target SNARE coiled-coil domai...		Potri.002G102400 [exp]	13.41	0.8834
AT3G14470			NB-ARC domain-containing disea...		Potri.003G025904 [exp]	14.69	0.8667
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.012G068600 [exp]	15.49	0.8816
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	16.88	0.8835
AT2G37150			RING/U-box superfamily protein...		Potri.008G041201 [exp]	24.33	0.8768
AT5G12260			unknown protein		Potri.012G121826 [exp]	24.39	0.8782
AT3G17380			TRAF-like family protein (.1)		Potri.017G049100 [exp]	24.81	0.8741
AT5G12920			Transducin/WD40 repeat-like su...		Potri.001G016800 [exp]	28.72	0.8628

Compare expression of checked genes

Potri.005G220500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.