Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08800 158 / 2e-39 Protein of unknown function, DUF593 (.1.2) AT2G30690 155 / 8e-39 Protein of unknown function, DUF593 (.1) AT1G70750 142 / 8e-35 Protein of unknown function, DUF593 (.1) AT5G16720 136 / 7e-33 Protein of unknown function, DUF593 (.1) AT1G74830 108 / 3e-24 Protein of unknown function, DUF593 (.1) AT1G18990 100 / 5e-22 Protein of unknown function, DUF593 (.1) AT5G06560 100 / 9e-22 Protein of unknown function, DUF593 (.1) AT3G54740 86 / 3e-17 Protein of unknown function, DUF593 (.1.2) AT4G13630 69 / 1e-11 Protein of unknown function, DUF593 (.1.2) AT3G11850 64 / 3e-10 Protein of unknown function, DUF593 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042500 [exp] 1130 / 0 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 409 / 3e-128 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 388 / 1e-120 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 260 / 1e-75 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.017G129200 [exp] 159 / 5e-40 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 154 / 3e-38 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 150 / 6e-37 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 112 / 6e-25 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 109 / 2e-24 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033854 [exp] 446 / 4e-145 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10018782 [exp] 448 / 8e-145 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10024869 [exp] 444 / 6e-144 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10014743 [exp] 248 / 3e-71 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 170 / 2e-43 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10006566 [exp] 170 / 3e-43 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10005527 [exp] 165 / 8e-42 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10002289 [exp] 160 / 4e-40 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10036656 [exp] 80 / 4e-15 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 79 / 5e-15 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [poplar] [flax] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Potri.005G220600.7 pacid=42803112 polypeptide=Potri.005G220600.7.p locus=Potri.005G220600 ID=Potri.005G220600.7.v4.1 annot-version=v4.1 ATGGCTCCAACTGGCACCTCATTTGTTAAAGTACAGAGGAATTTGCAGAGGTTTATGACAGTTCTACAATCAGCAGTTTCTGAATGGTTTTTGATCTTTC TGCTGCTGATTGATGCTGCACTGTCGTATCTGCTGACAAAATTTGCAAGTTATTGCAGATTGCAAATACCTTGCATGTTTTGTTCCAGGCTTGATCATTT TCTGGGCAATGAAAAACCTGGATTTTATAAAAAGGTAATTTGCAGCAACCATAGATCAGAAATATCAACCTTGATTTCTTGTCACATTCATGGGAAGCTT GCTGATGGCTATGGAATGTGTGAGGAATGTCTACTGTCATCCACTATGAAAAGCAAATCAAGCACAGATATAAACAGACTGTTGATGGGTAAGTTTGGGT TTGATATTGGCGCTGATGGTTTCGAGAACTATTTGTGGAGTAGAGAACTTGTTTCTGGTTCTGTTGGTATGAGGATGTGCTCATGTTGCAATAAGCCTTG GAGATCAAGACAGCCTTCCAACAGAGTAGCCCAACTGAAATCACCTAGGAGTGGGATGACTAAGCCTAATATTCCCATGCCCCGCCATTTAACCCACCGT GAAAATATAAAGAAAAGGAGAGAGAATTTTCCTGGATCTGTAACATCTCACCGTCTTGTAAGGTGTGGTTACAATCCTGGGTCACAAGTAGCATACACTG AGCTCAAGTTCACTTCTGATTCTGAGTCGGAATTCCCATTTTCTGATGATGATGAGGGCCGTAGTATTAGTCACATAATGAAGGAGCTGAAGGAAGAGCC TATAGTTTCCCCCAAAACATTGACCGATGGTATAGCCTCGGAGAAGATGACGTATCATTCCTTGAAAGGTTTGGCTTCTGATGTTGAGTTTAACAGGCAG CAAGCTGATCATGAAAACTATCCCTCTGCCCTACCTCAGCTTATTTCTTTTGATGATTTTCCTTCTTCATCCAGTGTAATGGACATTCATGTAGGAGTGT CATCGGTGAGAAGTGAGCTCATGTTTCCTTTCTCTCAGAATTACAATCTTTCTGCACTCTCTGATCTCATGTCACTGGCAGTTCCCTCATCATCTAATGC TGTTGAAGGTCCTTTGGAAGCATCAGAAAGGAAATCAAATGACATTGGAACGGGTGACAGACAAGATATATCCATCAACAAGCACAAGGAAATTTCTATA TTAACTGCACCTACCAGAGGAGGTGGTCAGGTTGCTAATGAAGTGCCTTCTATAAATTCACGTAGTGTGGATCTGATTGATGTATGGAAGCCTGCTGCCA GTGGTGAGGATGGAGAATCAAGAACTTCTATGGCAAAAAAACAGACTGCAAATGGACCTGAAAGAGTTGATATGGAGTTGCCAACGGAAAATGTTTTTGC TGAAGGGCCTGATTTATCTTCGCATAACGCTATCACCGGGATTGAAGGTCATGATGATGAATTGCAGATGAATAATGCTGTGAGATCTAATGGAGTTCAA ATGCTTAAGACAGAGAGCACTGGATCATCCGGTCTTGAGTCTCTCGATGGAAGCTTTTTCACTGAGATTGAAGGTGAAAGTACTATTGATCGGTTAAAGC GACAAGTGGAGTCAGATAGGAGACACATAAGCGCTTTGTACAAGGAATTAGAGGAAGAAAGAAGTGCTTCTGCAATTTCTGCAAATCAGGCAATGGCCAT GATCACAAGGTTGCAAGAGGAAAAGGCAGCACTTCATATGGAGGCCCTGCAGTACTTAAGAATGATGGAAGAGCAAGCAGAGTATGATGTAGAGGCTCTG GAGAAAGCTAATGATCTGCTGGCTGAGAAAGAGAAAGAAATACAGGACTTGGAAGCAGAGATAGACTCTTTGCAATTGAACCTCTCCAATGAATCAACAG CAGAGACTATACATGTGGAAAGTGATGATCTGAAGGGGAAAAACATGAGTTTAGAGAATACTTCCCCATGCTATGATGATACCATTGTTCCTTGTAGCTC ATCATTTAGGGAGGTCTTGAATGACAATGAGAAACCTGCTAGTGTCAAATCTTCTTTGTCAGAATATGAAGAAGAAAAGTTTCTCATTTCACAGCGTTTG AAGGGTTTGGAGAGGAAACTTCATCAATTTGCATCTCATGGGGGTTCGCAATCCATGTCTGATAGTGACTATTCCCAGGAAGCAGCTCATGGAGGGCATA ATGTGGGAGAATCTTTAGACTATGAGGGGAGTCGAACAGCTGATCAGACAAAAGAGGATAATTTGTCAATGCAAAAGGATTCACCTGTATCTAATGGAAG CCTTCCTGCCCATGAAATGTCCAGTGCTTCAGTTGGCAAACATCAAGTTGTTGCTAACAATGAAAGTAACCATCTGATTTTTGACGGGAAAAAATCCTCC AAGCAACACAAAGAAATTGATTTGGTTGTTCTTGAAAATGAAATCTCAGACCTTAATGGAAGATTGGAAGCACTTGAATTTGATAGGAATTTTCTGGAGC ATGCTTTCAATTCTCTTCAATCTGGAAAAGAGGGACTACAATTTGTTGAAGAAATAGTTCATCATCTACAAGAGTTGCGGAAAATTGGGATGAGAAATAG TAGCGGATCTGTTCCTTGA
AA sequence Show only first row Show all	>Potri.005G220600.7 pacid=42803112 polypeptide=Potri.005G220600.7.p locus=Potri.005G220600 ID=Potri.005G220600.7.v4.1 annot-version=v4.1 MAPTGTSFVKVQRNLQRFMTVLQSAVSEWFLIFLLLIDAALSYLLTKFASYCRLQIPCMFCSRLDHFLGNEKPGFYKKVICSNHRSEISTLISCHIHGKL ADGYGMCEECLLSSTMKSKSSTDINRLLMGKFGFDIGADGFENYLWSRELVSGSVGMRMCSCCNKPWRSRQPSNRVAQLKSPRSGMTKPNIPMPRHLTHR ENIKKRRENFPGSVTSHRLVRCGYNPGSQVAYTELKFTSDSESEFPFSDDDEGRSISHIMKELKEEPIVSPKTLTDGIASEKMTYHSLKGLASDVEFNRQ QADHENYPSALPQLISFDDFPSSSSVMDIHVGVSSVRSELMFPFSQNYNLSALSDLMSLAVPSSSNAVEGPLEASERKSNDIGTGDRQDISINKHKEISI LTAPTRGGGQVANEVPSINSRSVDLIDVWKPAASGEDGESRTSMAKKQTANGPERVDMELPTENVFAEGPDLSSHNAITGIEGHDDELQMNNAVRSNGVQ MLKTESTGSSGLESLDGSFFTEIEGESTIDRLKRQVESDRRHISALYKELEEERSASAISANQAMAMITRLQEEKAALHMEALQYLRMMEEQAEYDVEAL EKANDLLAEKEKEIQDLEAEIDSLQLNLSNESTAETIHVESDDLKGKNMSLENTSPCYDDTIVPCSSSFREVLNDNEKPASVKSSLSEYEEEKFLISQRL KGLERKLHQFASHGGSQSMSDSDYSQEAAHGGHNVGESLDYEGSRTADQTKEDNLSMQKDSPVSNGSLPAHEMSSASVGKHQVVANNESNHLIFDGKKSS KQHKEIDLVVLENEISDLNGRLEALEFDRNFLEHAFNSLQSGKEGLQFVEEIVHHLQELRKIGMRNSSGSVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08800			Protein of unknown function, D...		Potri.005G220600 [exp]	0	1
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Potri.009G168200 [exp]	1.00	0.7357
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Potri.014G128400 [exp]	12.84	0.6948
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Potri.019G082000 [exp]	14.73	0.6682	Pt-INV1.2
AT5G06750			Protein phosphatase 2C family ...		Potri.016G045600 [exp]	18.73	0.6298
AT5G43830			Aluminium induced protein with...		Potri.008G158400 [exp]	20.09	0.7035
AT1G10180			unknown protein		Potri.015G118500 [exp]	23.45	0.6506
AT2G27730			copper ion binding (.1)		Potri.004G201700 [exp]	27.29	0.6802
AT5G27200		ACP5	acyl carrier protein 5 (.1)		Potri.005G044800 [exp]	29.66	0.6819	Pt-ACP1.1
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Potri.014G180800 [exp]	37.62	0.6583
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G120800 [exp]	37.82	0.6569

Compare expression of checked genes

Potri.005G220600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.