Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BET11.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58170 206 / 4e-70 ATBET11, ATBS14A ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) AT4G14455 150 / 6e-48 ATBS14B ,ATBET12 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041500 [exp] 235 / 1e-81 AT3G58170 202 / 7e-69 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Potri.010G074100 [exp] 156 / 2e-50 AT4G14455 147 / 1e-46 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Potri.011G059700 [exp] 39 / 0.0004 AT1G28490 310 / 2e-107 syntaxin of plants 61 (.1.2) Potri.008G164600 [exp] 36 / 0.0007 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033868 [exp] 201 / 5e-68 AT3G58170 187 / 1e-62 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Lus10024876 [exp] 208 / 6e-64 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10041158 [exp] 144 / 2e-45 AT4G14455 164 / 6e-53 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Lus10000706 [exp] 154 / 2e-44 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10021879 [exp] 99 / 9e-28 AT4G14455 110 / 4e-32 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Lus10014756 [exp] 97 / 2e-24 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10009926 [exp] 87 / 1e-23 AT3G58170 81 / 6e-21 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Lus10018642 [exp] 38 / 0.0008 AT1G28490 334 / 7e-117 syntaxin of plants 61 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G221600.5 pacid=42804653 polypeptide=Potri.005G221600.5.p locus=Potri.005G221600 ID=Potri.005G221600.5.v4.1 annot-version=v4.1 ATGAATTCGAGGAGGGACATCCGTAACAATAGAGCTGCTCTTTTTGATGGAATTGAGGAGGGTGGCATCAGAGCCTCATCCTCTTACTCCTCCCATGAGA TTGATGAGCAAGATAATGAAAGAGCTTTGGAAGGATTGCAAGATAGAGTCATTCTGCTGAAGAGACTGTCAGGTGATATAAATGAAGAGGTGGACAACCA TAATCTTATGCTAGACAGAATGGGCAATGATATGGATTCTTCCAGGGGAGTGCTGTCAGGAACCATGGATCGCTTTAAGATGGTATTTGAAACCAAATCA AGCCGTAGAATGTTTACACTCGTGGCATCATTTGTGGTCCTATTCCTAATTATATACTATCTCACTAGGTAA
AA sequence Show only first row Show all	>Potri.005G221600.5 pacid=42804653 polypeptide=Potri.005G221600.5.p locus=Potri.005G221600 ID=Potri.005G221600.5.v4.1 annot-version=v4.1 MNSRRDIRNNRAALFDGIEEGGIRASSSYSSHEIDEQDNERALEGLQDRVILLKRLSGDINEEVDNHNLMLDRMGNDMDSSRGVLSGTMDRFKMVFETKS SRRMFTLVASFVVLFLIIYYLTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.005G221600 [exp]	0	1	BET11.1
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	1.00	0.8338
AT1G27970		NTF2B	nuclear transport factor 2B (....		Potri.003G170800 [exp]	2.82	0.7849	Pt-NTF2.1
AT1G61780			postsynaptic protein-related (...		Potri.004G021200 [exp]	4.89	0.7972
AT5G41340		ATUBC4, UBC4	ubiquitin conjugating enzyme 4...		Potri.001G101900 [exp]	5.09	0.7521	UBC4.4
AT1G79390			unknown protein		Potri.010G174700 [exp]	6.70	0.7583
AT4G13720			Inosine triphosphate pyrophosp...		Potri.001G052400 [exp]	7.93	0.7611
AT1G27970		NTF2B	nuclear transport factor 2B (....		Potri.001G057500 [exp]	8.00	0.7996
AT2G37195			unknown protein		Potri.006G127800 [exp]	9.21	0.7720
AT5G58575			unknown protein		Potri.001G279700 [exp]	9.94	0.7549
AT1G55880			Pyridoxal-5'-phosphate-depende...		Potri.001G367000 [exp]	13.49	0.7160

Compare expression of checked genes

Potri.005G221600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.