Plant FIBer expression Database

Potri.005G221700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58180 459 / 7e-164 ARM repeat superfamily protein (.1)
AT3G62530 139 / 9e-40 ARM repeat superfamily protein (.1)
AT3G43260 47 / 8e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G041400
[exp]
552 / 0 AT3G58180 497 / 3e-179 ARM repeat superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006688
[exp]
470 / 4e-168 AT3G58180 484 / 5e-174 ARM repeat superfamily protein (.1)
Lus10007032
[exp]
469 / 1e-167 AT3G58180 484 / 5e-174 ARM repeat superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF13646 HEAT_2 HEAT repeats
Representative CDS sequence
>Potri.005G221700.1 pacid=42803784 polypeptide=Potri.005G221700.1.p locus=Potri.005G221700 ID=Potri.005G221700.1.v4.1 annot-version=v4.1
ATGGGTTCATTGAAAGCAACCATCCCAACAGATTCCCGGTCCAACTTGGAGCAATTTCTTTTTGATCGGTTGCTCGACCAGAGCCAGCCCATCCACGAGC
GCTTTAGAGCTCTCTTCTCTCTCCGTAACCTCAAAGGCCCTGGACCCCGCAACGCCCTCATTCATGCAACAAGGGATTCTTCAAATTTGCTGGCACATGA
GGCTGCATTTGCGTTGGGTCAAATGCAAGATGCTGAAGCTATCCCTGCTCTGGAAGCAGTTCTAAATGATCTTTCTTTGCATCCTATTGTTCGCCATGAG
GCTGCTGAAGCTCTTGGTGCAATTGGTTTAGAGAGTATTGTACCTCTTTTGAAGAATAGCTTGACTGGTGATCCGGCTCAGGAGGTTAGAGAAACTTGTG
AACTGGCTCTCAAGCGAATTGAGGAAATGAATGCTACAACAAGCACTGTTGATGGATCATCTGTGGCTGAAAAATCACCCTTCCTGTCTGTTGACCCAGC
CGCACCAGCTTCTTTAAGCTCTTCTGTTGATGAGCTGAGGGGATTTCTTCTGGATGAAAAAAGAGGCATGTATGAGCGCTACGGTGCTCTTTTTGCACTT
CGGAATCATGGTGGGGATGGAGCTGTTTCTGCTATAGTTGATTCTTTGGCTGCAAATAGTGCACTGCTTAAGCATGAGGTTGCTTATGTTTTGGGCCAAT
TGCAAAACAAAGCTGCTTCAGCTGCCCTTTGTAGAATACTTAGAAATGCAAATGAGCATCCAATGGTCAGGCATGAGGCTGCAGAAGCTCTTGGTTCCAT
TGCAGATGAGAAAAGTGTTGCGCTTCTTGAGGAATTCTCAAAGGATCCTGAGCCTCTTGTTGCACAAAGCTGTGAAGTTGCTCTGAGCATGCTAGAATTT
GAAAGATCAGGAAAATCATTTGAGTACCTCTTCATGCAAGACCCTCTAGCACAAGCTTAA
AA sequence
>Potri.005G221700.1 pacid=42803784 polypeptide=Potri.005G221700.1.p locus=Potri.005G221700 ID=Potri.005G221700.1.v4.1 annot-version=v4.1
MGSLKATIPTDSRSNLEQFLFDRLLDQSQPIHERFRALFSLRNLKGPGPRNALIHATRDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDLSLHPIVRHE
AAEALGAIGLESIVPLLKNSLTGDPAQEVRETCELALKRIEEMNATTSTVDGSSVAEKSPFLSVDPAAPASLSSSVDELRGFLLDEKRGMYERYGALFAL
RNHGGDGAVSAIVDSLAANSALLKHEVAYVLGQLQNKAASAALCRILRNANEHPMVRHEAAEALGSIADEKSVALLEEFSKDPEPLVAQSCEVALSMLEF
ERSGKSFEYLFMQDPLAQA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G58180 ARM repeat superfamily protein... Potri.005G221700
[exp]
0 1
AT3G09890 Ankyrin repeat family protein ... Potri.016G097900
[exp]
8.18 0.7514
AT1G07400 HSP20-like chaperones superfam... Potri.006G073500
[exp]
9.89 0.7293
AT1G71210 Pentatricopeptide repeat (PPR)... Potri.003G000701
[exp]
11.04 0.6510
AT4G33100 unknown protein Potri.006G224400
[exp]
13.78 0.7017
AT5G53400 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones... Potri.012G014100
[exp]
14.73 0.6710
AT3G12680 C3HZnF HUA1 ENHANCER OF AG-4 1, floral hom... Potri.008G080300
[exp]
14.86 0.6858 Pt-HUA1.1
AT3G11830 TCP-1/cpn60 chaperonin family ... Potri.004G195300
[exp]
15.68 0.7067
AT2G19540 Transducin family protein / WD... Potri.005G074400
[exp]
26.32 0.7038
AT2G35720 OWL1 ORIENTATION UNDER VERY LOW FLU... Potri.001G158200
[exp]
26.32 0.6996
AT5G47660 Trihelix Homeodomain-like superfamily p... Potri.016G005900
[exp]
28.39 0.6782

Potri.005G221700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.