Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42450 643 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G14075 92 / 3e-19 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT4G16070 88 / 4e-18 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT1G05790 62 / 8e-10 lipase class 3 family protein (.1.2) AT4G00500 60 / 3e-09 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G49050 53 / 4e-07 alpha/beta-Hydrolases superfamily protein (.1) AT5G37710 47 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041000 [exp] 141 / 2e-39 AT2G42450 139 / 5e-39 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 95 / 3e-20 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 93 / 1e-19 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 86 / 2e-17 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.002G159200 [exp] 56 / 4e-08 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G083600 [exp] 54 / 3e-07 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G130000 [exp] 51 / 2e-06 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G150800 [exp] 51 / 2e-06 AT1G05790 622 / 0.0 lipase class 3 family protein (.1.2) Potri.015G145900 [exp] 50 / 3e-06 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024878 [exp] 671 / 0 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000708 [exp] 642 / 0 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10013158 [exp] 96 / 1e-20 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 94 / 5e-20 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10015680 [exp] 93 / 2e-19 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037710 [exp] 89 / 2e-18 AT4G16070 764 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10016834 [exp] 88 / 6e-18 AT4G16070 750 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10030391 [exp] 63 / 2e-10 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 60 / 2e-09 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019566 [exp] 54 / 9e-08 AT1G05790 263 / 3e-84 lipase class 3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.005G222000.1 pacid=42803709 polypeptide=Potri.005G222000.1.p locus=Potri.005G222000 ID=Potri.005G222000.1.v4.1 annot-version=v4.1 ATGGCAAACCGATACCTAAAACGCCTCTTCCACAACATGTACTGTAGCAATAATATATTGAAAAGGCAACAAACATGCAGGAAGTTTCTGTATGGTGTTA TAAACAGGAGCCAATCAGAAATGTCAAAATCAGAAAAATCAGCTCAAGTATCTTCTCCTTCTTCTTCAAAGACTAATAAAAAATCTGGAGGTGAACTTAG CAACTACAGCTCTGGTGATGACGATTTGAGTGATAATAAGGGGAAAATAGAGCTTGCTTGGCTTACTAAAGCTCTTGAACCTGCTCTCCAGTTATGCAGG TGGGCTCTCTCTACAGGGAATGGGGTTGGAAATAAAATTCCAGCGAGTACCCGATCGGTTTCGGAAATAATTGCTAGCATTCAGCGGAGCAAGATTGCCA TTGAGGGTTGGAGTTTGAGTGATCTCACGATAGGATTGTATCTAATTTATCTGCGTCAGGCGTCATTAAATCTTTTTGAGGATGTTAAGGGAGTTGAAGT TTTTTCGGAGTCGATAGTCCATGATCTTATCTATCATGTTGAGTTAGCAAAAGGTTGTTATAAGGATGGTCCTTCTGGACTTGTAAGGAATAGCATGATC CGTGAAAACAATGTTCTTAAGTTTGTAAAAAATTCTAGTGTGATGAGGCCTGGATATTACATTGCCATTGATCCTAGAAAGAAACTAGTAATTCTTGGAA TTCGTGGAACTCATACTGTCTATGACCTTATCACCGATATTGTTTCCTCAAGTGATGGAGAAGTCACATTTGAAGGCTATTCAACCCACTTTGGCACAAC TGAAGCTGCTCGTTGGTTTCTTAGTCATGAGATGGGAACCATAAGGAAATGCTTAGAGAAATACGAGGGATTTAGATTAAGGTTGGTGGGACATTCTCTT GGAGCTGCAATAGCTTCTTTGCTAGCAATCATGCTCCGTAAAAAGTCACCTAAGGAACTTGGTTTTAGCCCAGACATTGTTACTGCTGTTGGCTATGCAA GTCCACCCTGTGTCTCCAAAGAACTTGCTGAAAGTTGCTCTGATTTTGTTATAAACGTAGTAATGAAGGACGACATCATACCTAGATTAAGTGCAGCTTC TCTGGAAAGACTGAGAAAGGAAATTCTTCAAACTGATTGGATGAGTGTGGTTGAGAAGGAGGACTGGAAGAGTGTGATAGGTTTGGTCACAAATGCAAAG CAGGTTGTCACTTCTATTCAGGATGTAGCTCAGAAACTTGCTGATTATGCTAAATTTGGTAGCAATAAAAATTCTCCTGATGGTTCCATCACAAGAGAAT CCCTCGCTATCCCTGCAGCCCCTTCAACTTCCAAAGCTACTACAGAGAATGCTGTTATCCCTGAAAAGGAACGAAATGTCAATGCATTGCCGAAGGAGTT GTTTGTTCCTGGGAGCATTTACTATCTAAAGAGGGACATCAACACTGATGCTCACACTATCAGTGGCAGAGGCATGGAGCTTTTCACGCTCTGGAAGAGG CATCCAGGTGAGCATTTCGAGAGGATAGTCCTCCCCGGCAACATCATTTCCGACCACAAATGTGATAGCCATTACTATGCTCTCAGAGATGTGCTTAAAG GTTTGCCTGGTACCAATAATGAAAGCATTTTCAAATAA
AA sequence Show only first row Show all	>Potri.005G222000.1 pacid=42803709 polypeptide=Potri.005G222000.1.p locus=Potri.005G222000 ID=Potri.005G222000.1.v4.1 annot-version=v4.1 MANRYLKRLFHNMYCSNNILKRQQTCRKFLYGVINRSQSEMSKSEKSAQVSSPSSSKTNKKSGGELSNYSSGDDDLSDNKGKIELAWLTKALEPALQLCR WALSTGNGVGNKIPASTRSVSEIIASIQRSKIAIEGWSLSDLTIGLYLIYLRQASLNLFEDVKGVEVFSESIVHDLIYHVELAKGCYKDGPSGLVRNSMI RENNVLKFVKNSSVMRPGYYIAIDPRKKLVILGIRGTHTVYDLITDIVSSSDGEVTFEGYSTHFGTTEAARWFLSHEMGTIRKCLEKYEGFRLRLVGHSL GAAIASLLAIMLRKKSPKELGFSPDIVTAVGYASPPCVSKELAESCSDFVINVVMKDDIIPRLSAASLERLRKEILQTDWMSVVEKEDWKSVIGLVTNAK QVVTSIQDVAQKLADYAKFGSNKNSPDGSITRESLAIPAAPSTSKATTENAVIPEKERNVNALPKELFVPGSIYYLKRDINTDAHTISGRGMELFTLWKR HPGEHFERIVLPGNIISDHKCDSHYYALRDVLKGLPGTNNESIFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42450			alpha/beta-Hydrolases superfam...		Potri.005G222000 [exp]	0	1
AT3G56680			Single-stranded nucleic acid b...		Potri.008G021900 [exp]	2.82	0.8729
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.011G118800 [exp]	3.16	0.8683
AT5G38600			Proline-rich spliceosome-assoc...		Potri.017G111300 [exp]	9.79	0.8510
AT2G44280			Major facilitator superfamily ...		Potri.009G024600 [exp]	10.19	0.8306
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	10.90	0.8418
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	11.31	0.8541
AT5G13950			unknown protein		Potri.002G237800 [exp]	12.00	0.8667
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	13.41	0.8534
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Potri.004G113700 [exp]	14.00	0.8067
AT2G27090			Protein of unknown function (D...		Potri.009G159000 [exp]	17.74	0.8278

Compare expression of checked genes

Potri.005G222000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.