Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14420 153 / 4e-48 HR-like lesion-inducing protein-related (.1) AT1G04340 152 / 7e-48 HR-like lesion-inducing protein-related (.1) AT5G43460 141 / 1e-43 HR-like lesion-inducing protein-related (.1) AT3G23190 59 / 3e-11 HR-like lesion-inducing protein-related (.1) AT3G23180 54 / 4e-09 HR-like lesion-inducing protein-related (.1) AT3G23175 48 / 3e-07 HR-like lesion-inducing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165200 [exp] 203 / 4e-68 AT4G14420 182 / 8e-60 HR-like lesion-inducing protein-related (.1) Potri.010G073400 [exp] 191 / 2e-63 AT4G14420 170 / 8e-55 HR-like lesion-inducing protein-related (.1) Potri.008G165100 [exp] 158 / 2e-50 AT1G04340 172 / 6e-56 HR-like lesion-inducing protein-related (.1) Potri.010G073500 [exp] 138 / 2e-42 AT5G43460 149 / 8e-47 HR-like lesion-inducing protein-related (.1) Potri.002G040900 [exp] 100 / 2e-28 AT4G14420 62 / 1e-13 HR-like lesion-inducing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041149 [exp] 184 / 2e-60 AT4G14420 187 / 7e-62 HR-like lesion-inducing protein-related (.1) Lus10021877 [exp] 180 / 7e-59 AT4G14420 189 / 1e-62 HR-like lesion-inducing protein-related (.1) Lus10021205 [exp] 131 / 2e-39 AT1G04340 182 / 1e-59 HR-like lesion-inducing protein-related (.1) Lus10041152 [exp] 96 / 7e-26 AT5G43460 144 / 5e-45 HR-like lesion-inducing protein-related (.1) Lus10022198 [exp] 100 / 9e-25 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [poplar] [flax] DoxD-like PF05514 [poplar] [flax] HR_lesion HR-like lesion-inducing
Representative CDS sequence Show only first row Show all	>Potri.005G222200.1 pacid=42804677 polypeptide=Potri.005G222200.1.p locus=Potri.005G222200 ID=Potri.005G222200.1.v4.1 annot-version=v4.1 ATGGCTTTCACTTCATTTCTTGGACGAGTCCTCTTTGCCTCTGTTTTCATACTCTCTGCTTACCAAGAGTTCAATGAATTCGGGGTTGATGGAGGACCGG CTGCGAAGGCACTGAAACCAAAGTTTGGTGTGTTTACCAGTCATGTGCAATCTCACGCCGGCATACAAGTACCGGAAATTGAAATCAAACATTTAGTCAG CGCTGCTATATTTCTCAAGGGCATTGGAGGCATCCTTTTTATCATTGGCAGCTCTCTTGGAGCCTACCTGCTGATTATACATCAGCTGATTGCAATTCCA ATCCTATATGATTTCTACAACTATGACAGTGAGGAGAAAGAGTTTAATCAACTTTTCATCAAATTTACACAGAATATGGCTCTCTATGGAGCACTACTGT TTTTCATTGGGATGAAGAACTCATTTCCCAGGAGACAGCACAAGAAGAAGGTTCCTAAAACTAAAACTGGTTAG
AA sequence Show only first row Show all	>Potri.005G222200.1 pacid=42804677 polypeptide=Potri.005G222200.1.p locus=Potri.005G222200 ID=Potri.005G222200.1.v4.1 annot-version=v4.1 MAFTSFLGRVLFASVFILSAYQEFNEFGVDGGPAAKALKPKFGVFTSHVQSHAGIQVPEIEIKHLVSAAIFLKGIGGILFIIGSSLGAYLLIIHQLIAIP ILYDFYNYDSEEKEFNQLFIKFTQNMALYGALLFFIGMKNSFPRRQHKKKVPKTKTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14420			HR-like lesion-inducing protei...		Potri.005G222200 [exp]	0	1
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.007G140200 [exp]	4.69	0.8421
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	6.85	0.8693
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G094000 [exp]	10.24	0.8354
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.003G183300 [exp]	12.32	0.8484
AT1G73620			Pathogenesis-related thaumatin...		Potri.015G039200 [exp]	12.72	0.8666
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.014G158400 [exp]	16.73	0.8517
AT5G50150			Protein of Unknown Function (D...		Potri.015G080300 [exp]	17.49	0.8301
AT2G25270			unknown protein		Potri.018G023200 [exp]	20.04	0.8610
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Potri.018G068500 [exp]	21.63	0.8597	Pt-MKK6.1
AT5G12970			Calcium-dependent lipid-bindin...		Potri.001G015700 [exp]	22.44	0.8355

Compare expression of checked genes

Potri.005G222200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.