Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30840 0 / 1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G040700 [exp] 0 / 1 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 0 / 1 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 0 / 1 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 0 / 1 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G083100 [exp] 0 / 1 AT1G04350 287 / 5e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033877 [exp] 68 / 1e-13 AT1G06620 223 / 2e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000611 [exp] 63 / 2e-11 AT1G06620 250 / 7e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 43 / 0.0001 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 40 / 0.0008 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10033878 [exp] 0 / 1 AT5G59540 308 / 4e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10000612 [exp] 0 / 1 AT5G59540 337 / 2e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10033879 [exp] 0 / 1 AT5G59540 312 / 8e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G222401.1 pacid=42802490 polypeptide=Potri.005G222401.1.p locus=Potri.005G222401 ID=Potri.005G222401.1.v4.1 annot-version=v4.1 ATGGAGCTATACACGCATGACCGTCAGTGCCCAGTGAGGCTCTACTCCAATGGAGATCTCCTAGTGAACAGAGGACCAGCTTGCTGGAGAGATACAGTAG CATTCAACTGCGAAGAATGTAATCTGAATCATCTAGTGTTTCCTGAAATATTCAGAAAAGAAGTGAGTGATTACATCAGACAGACGATCAAAATGAGGAA GCCACTATCTGAACTAATATCAGAGGCAATTCAGCATAGAATTCATGGAAACAGAGATTCTGTTGTGCCACTATTACCCAATTTGTCCCTAGCCAGACTT GATGTTGGGCACACCCATGCATTCAGACCCATGTTTTCTGACTATAGGCCTGCAAGACTTCAAGGGTGGCCTCCAATTTCGCGTTCAAAATCAATGGGTA GATATCCCCCTCAGCAGGGAGGAGCTCTTGAATATTGTGGAACAATTACGACCTTAATGTTGTTTCCTGCATTTTGTAGCTTATCAGCAATGACAGGTTC AAAAGTGTGGTTGTTGTCGGACAAGTTGGATCCCAGCCATCAGTTGCACGTCTTTTCTATCCAAGCACTGCAAATTATAATTCCAAACCATAAGGGCCAA TATATAGGGAAACTAATGTAG
AA sequence Show only first row Show all	>Potri.005G222401.1 pacid=42802490 polypeptide=Potri.005G222401.1.p locus=Potri.005G222401 ID=Potri.005G222401.1.v4.1 annot-version=v4.1 MELYTHDRQCPVRLYSNGDLLVNRGPACWRDTVAFNCEECNLNHLVFPEIFRKEVSDYIRQTIKMRKPLSELISEAIQHRIHGNRDSVVPLLPNLSLARL DVGHTHAFRPMFSDYRPARLQGWPPISRSKSMGRYPPQQGGALEYCGTITTLMLFPAFCSLSAMTGSKVWLLSDKLDPSHQLHVFSIQALQIIIPNHKGQ YIGKLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Potri.005G222401 [exp]	0	1
AT5G13910	AP2_ERF	LEAFY PETIOLE ...	LEAFY PETIOLE, Integrase-type ...		Potri.003G077700 [exp]	10.48	0.5616
					Potri.009G135900 [exp]	14.73	0.5069
AT2G29260			NAD(P)-binding Rossmann-fold s...		Potri.008G107001 [exp]	18.97	0.4434
AT5G55690	MADS		MADS-box transcription factor ...		Potri.001G214900 [exp]	26.87	0.4644
AT4G38040			Exostosin family protein (.1)		Potri.012G091600 [exp]	31.36	0.4984
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G177802 [exp]	35.41	0.4527
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.018G125900 [exp]	40.86	0.4843
AT1G04645			Plant self-incompatibility pro...		Potri.018G148630 [exp]	42.86	0.4843
AT1G49330			hydroxyproline-rich glycoprote...		Potri.004G152600 [exp]	48.57	0.4193
					Potri.006G047250 [exp]	48.74	0.4410

Compare expression of checked genes

Potri.005G222401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.