Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31270 356 / 7e-116 ATCDT1A, CDT1A, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) AT3G54710 271 / 3e-84 ATCDT1B, CDT1B, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G040100 [exp] 801 / 0 AT2G31270 339 / 1e-109 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Potri.004G067700 [exp] 133 / 7e-33 AT2G31270 115 / 8e-27 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000708 [exp] 385 / 7e-122 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10024879 [exp] 342 / 6e-112 AT2G31270 292 / 7e-93 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Lus10040505 [exp] 213 / 1e-61 AT3G54710 171 / 5e-47 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1) Lus10011306 [exp] 187 / 2e-52 AT3G54710 110 / 2e-25 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF08839 [poplar] [flax] CDT1 DNA replication factor CDT1 like CL0123 [poplar] [flax] HTH PF16679 [poplar] [flax] CDT1_C DNA replication factor Cdt1 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G222700.1 pacid=42804354 polypeptide=Potri.005G222700.1.p locus=Potri.005G222700 ID=Potri.005G222700.1.v4.1 annot-version=v4.1 ATGAACTCCCTTCTATACTCACCAATCCCTTCTTCAAAATCCAAGAAACCTAAACTAGATTCTGAATCATCATCTTTAACCCCAAAATCTAAGCCTTCAA AATCCAAGAAACCTAAACTAGATTCTGAATCATCATCTTTAACCCCAAAATCTAAGCCTTCGAACTCAACAATCGCCACTCAAACCCCAACACAGCAATC CCAACTCCCTTCCCGCCTCCGCAACCGCCGTGTCGCCCTCTCCTTAAAAGAAGTCCGTCACATCGCCTCTCAAGACCATGGAACCAATCAAACCAAGTCC GCTCGAAGACAGATCGCGTCTTGGCCTGAGGATTCCACCACCGATACCACCACCAGTAAACTACCCAAGCCCAGAAAGAATCAGTCTCGTGATGGGCACA ATAAAATCCCCGATAAGTATGAAATGCTGGGTGAGTTTTTTGATAACTTGGATAGCTCGATCCGGTTGTTGCGTATGAAGGGCTCGATGTCTACTTTCTC TAACATTTCCCCAAAAATTGAGTCTTTAACAGACAGGAGGTTTACGCATAAACATTTGGCGCAATTGAAGTATATTATGCCAGAGGCAATTGAGATAAAG AGGGTACTCAAGTTTGATGAGCAAACCAGCTGTATGAAGCCGGATCTTCAAGTTACTGTAAATGCTGATGCAATTCAATGTGATGATGGCAAGTTGAAAA CTGAAAGTGAGAAAATATATTTAAGGAAGGTCTTCCGCTCAAGGCTTGTGGATTTTTATAGAGACCATCCTCAGGGTGATGATATTCCAGAGGAAATGCT CCCAGAGCCATTCAATCGCTCCCCATTGCTGGCAGGAACCCCGGCAATTGAAGAAGAGAAACCAGCAATGGCATCACTTTTATCCCGAAGTTTCAAGAGG CGCTTCTCCTCCCAAAAAGGTACAAAAATTGAAGCAGAAAACAGCCTCCAAAGATCAGTTTCCTCGGCTTTAGAGCCATGCCCCAGCAAAATCTCCTCCA ATGAGAGAACTAGTTATTCTGCTCCATCACCAGCCAAAGTGTCTTCCACACCTACCTGCGACCAAGATTGTTTATCTGCAACACCAAGCAAAGTGAAAGA TGCCATAAATGATGGAGATGATTCTCCCACAAAGATGGCTAGTGACCAATCAACTCCTGCAAAACTTGCTTTAACTCCAGTTGCATTGATATCTACCACA CCTGCATTGCATCAGCATAAAAGATGCACGAGCCCATATAATGATGGTTCTTCCAACTCACCAGACAAGCTTGTTAGGCGTCCCCCCAGCAGGTCATTGA TATTTGAAACTCCAGTGAAGCATGCTATGGATGAACAAAGAGAGACAGGGGATGTATCTGATGATGATGATGTCTTGAAAATTTTCCCTGAGAGTCTTCT GCAATCGATACGAGAGAAAGAACAGAAGGCTAAAGAAGAGAGAGATCCTGCAATCTCACAAGCAAAGAAGCGGCGGCAAATGATTGCCTGCCTTCCTAAG CTCTTCAACAAGATTCATTTCTTGTTTCAGTCAATAAGACAATCAGTTCTCACAAAAGAGGAGCTCATACACAAGATAATTGCAAGCCACTCTGATATTG CTGATAGAAGAGAAGTTGATGAGCAGCTAAACTTGTTGCTTGAACTCGTTCCTGAATGGATATCTGAGAAATTGGCATCTAGTGGGGATTCGATCTTTCG CATCAACAAAATGTACAGTCCAGAAACTGTACGAGCACGACTTGAAGAAGCCAAGTGA
AA sequence Show only first row Show all	>Potri.005G222700.1 pacid=42804354 polypeptide=Potri.005G222700.1.p locus=Potri.005G222700 ID=Potri.005G222700.1.v4.1 annot-version=v4.1 MNSLLYSPIPSSKSKKPKLDSESSSLTPKSKPSKSKKPKLDSESSSLTPKSKPSNSTIATQTPTQQSQLPSRLRNRRVALSLKEVRHIASQDHGTNQTKS ARRQIASWPEDSTTDTTTSKLPKPRKNQSRDGHNKIPDKYEMLGEFFDNLDSSIRLLRMKGSMSTFSNISPKIESLTDRRFTHKHLAQLKYIMPEAIEIK RVLKFDEQTSCMKPDLQVTVNADAIQCDDGKLKTESEKIYLRKVFRSRLVDFYRDHPQGDDIPEEMLPEPFNRSPLLAGTPAIEEEKPAMASLLSRSFKR RFSSQKGTKIEAENSLQRSVSSALEPCPSKISSNERTSYSAPSPAKVSSTPTCDQDCLSATPSKVKDAINDGDDSPTKMASDQSTPAKLALTPVALISTT PALHQHKRCTSPYNDGSSNSPDKLVRRPPSRSLIFETPVKHAMDEQRETGDVSDDDDVLKIFPESLLQSIREKEQKAKEERDPAISQAKKRRQMIACLPK LFNKIHFLFQSIRQSVLTKEELIHKIIASHSDIADRREVDEQLNLLLELVPEWISEKLASSGDSIFRINKMYSPETVRARLEEAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.005G222700 [exp]	0	1
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Potri.013G077200 [exp]	1.41	0.8506
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	4.47	0.8071
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.003G126500 [exp]	7.34	0.7403
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.002G040100 [exp]	12.96	0.6916
AT1G14900		HMGA	high mobility group A (.1)		Potri.010G109600 [exp]	13.56	0.7609
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	14.42	0.7280
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G255532 [exp]	15.49	0.7263
AT1G05370			Sec14p-like phosphatidylinosit...		Potri.008G152100 [exp]	17.54	0.7236
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.008G156100 [exp]	21.00	0.6563	TSO1.2
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Potri.007G108200 [exp]	22.38	0.7633

Compare expression of checked genes

Potri.005G222700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.