Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31190 691 / 0 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT5G49820 162 / 8e-45 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT1G13770 137 / 7e-36 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT3G45890 135 / 2e-34 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G01510 115 / 6e-28 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT2G23470 99 / 4e-22 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038600 [exp] 371 / 1e-128 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.001G193300 [exp] 157 / 1e-42 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.004G229500 [exp] 142 / 2e-37 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 141 / 2e-37 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.007G035300 [exp] 109 / 7e-26 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.006G099700 [exp] 80 / 5e-16 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003558 [exp] 687 / 0 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 624 / 0 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10038136 [exp] 164 / 5e-45 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 163 / 9e-45 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 157 / 3e-42 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 156 / 6e-42 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 133 / 2e-34 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10016778 [exp] 116 / 4e-28 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10022474 [exp] 115 / 1e-27 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10037076 [exp] 97 / 1e-21 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [poplar] [flax] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Potri.005G224000.4 pacid=42802342 polypeptide=Potri.005G224000.4.p locus=Potri.005G224000 ID=Potri.005G224000.4.v4.1 annot-version=v4.1 ATGAACTTGCTGGACAAGATTAAGATGCAGAAGAAGGAGCCTGACAAAACACCAGAAATTCCAGTCTACTGGATCGAAACCTCTGATTCTGTCTCTCGTC ACTTCCAGTTTGAACCCGACGGTCAACTCTCTATGAAGGTAGTTGATGATGCAAGACCAGTTTATCGTAGAGTGGTTGAATCTTTCTTGAACAAGTTTTT TCCATCAGGATATCCGTACAGTGTGAATGAGGGATATCTTAGATACACTCAATTTCGTGCGCTGCAACACTTTTCTAGTGCTGCATTATCTGTGCTATCT ACTCAGTCGCTACTATTTGCTGCTGGCTTGCGACCTACACCTGCACAAGCAACTGCAGTGAGTTGGATACTGAAGGATGGGATGCAGCACGCAGGAAAGC TCATATGTAGCAATTTGGGTGCTAGAATGGACTCAGAGCCCAAACGTTGGAGAATCCTAGCTGATGTGCTTTATGATTTGGGCACTGGCTTAGAAGTTCT CTCTCCTTTATGTCCACATCTTTTTCTTGAGGTGGCAGGGCTTGGCAATTTTGCAAAGGGGATGGCAGTGGTTGCAGCAAGGGCAACAAGGTTGCCAATA TATTCTTCATTTGCCAAAGAAGGCAATCTAAGTGACCTATTTGCAAAAGGGGAGGCCATCTCAACACTTTTCAATGTTCTTGGACTAGGAGTAGGAATTC AGTTAGCATCCACTGTCTGTTCATCAATGCAAGGGAAGTTTGTTGCTGGGCCTCTTCTTTCTATCGTACATGTTTGTTGTGTTATTGAAGAAATGCGAGC TACCCCTGTTAATACATTGAATCCACAGAGGACGGCAATGGTTGTGGCTGATTTTGTCAAGACAGGGAAAATATCAAGCCCTGCTGATCTTAGGTACCAT GAAGATCTCTTATTTCCAGGCCGACTTATAGAAGATGCTGGCAATGTAAAAGTTGGGCAGGCTTTGCACAGGGCGGTGAGGCCTTCAAAACTTCGTGAAT TGAAAGAAATATTTCCCGGGGAGAAGTTTATTCTAAGTCCTGGGAATAAATGGACTGATTTGGTATTGGAGCAAAATGCTAGTGGTGAAGATGCATTAAG GGCATGGCTGGTGGCTGCATATGCTTCGAGCATGAAGAAGTCTTCTCATGAGTCTACTTCTGTCACCTTGCAAGATGCTTATGAGAAGATGAATAGCGTA TTTGATCCATTTTTATCTGAGCTGCAAGCCAAAGGGTGGCATACTGATCGTTTTCTTGATGGAACAGGAAGCCGGTTTTCATGGTAG
AA sequence Show only first row Show all	>Potri.005G224000.4 pacid=42802342 polypeptide=Potri.005G224000.4.p locus=Potri.005G224000 ID=Potri.005G224000.4.v4.1 annot-version=v4.1 MNLLDKIKMQKKEPDKTPEIPVYWIETSDSVSRHFQFEPDGQLSMKVVDDARPVYRRVVESFLNKFFPSGYPYSVNEGYLRYTQFRALQHFSSAALSVLS TQSLLFAAGLRPTPAQATAVSWILKDGMQHAGKLICSNLGARMDSEPKRWRILADVLYDLGTGLEVLSPLCPHLFLEVAGLGNFAKGMAVVAARATRLPI YSSFAKEGNLSDLFAKGEAISTLFNVLGLGVGIQLASTVCSSMQGKFVAGPLLSIVHVCCVIEEMRATPVNTLNPQRTAMVVADFVKTGKISSPADLRYH EDLLFPGRLIEDAGNVKVGQALHRAVRPSKLRELKEIFPGEKFILSPGNKWTDLVLEQNASGEDALRAWLVAAYASSMKKSSHESTSVTLQDAYEKMNSV FDPFLSELQAKGWHTDRFLDGTGSRFSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Potri.005G224000 [exp]	0	1
AT2G15580			RING/U-box superfamily protein...		Potri.018G114500 [exp]	4.00	0.9253
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Potri.007G006300 [exp]	7.21	0.9196
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Potri.015G079700 [exp]	9.16	0.9364
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	9.94	0.9425	CYP97C4
AT4G36390			Methylthiotransferase (.1)		Potri.007G018500 [exp]	11.04	0.9387
AT5G66720			Protein phosphatase 2C family ...		Potri.007G028900 [exp]	13.19	0.9264
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Potri.006G203700 [exp]	20.44	0.8823
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099200 [exp]	27.56	0.9235
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	31.17	0.8878
AT3G28460			methyltransferases (.1)		Potri.001G349800 [exp]	31.74	0.9262

Compare expression of checked genes

Potri.005G224000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.