Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20500 53 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038400 [exp] 297 / 4e-104 AT2G20500 58 / 7e-11 unknown protein Potri.008G167200 [exp] 79 / 2e-18 AT4G14380 87 / 2e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003556 [exp] 109 / 5e-30 ND / Lus10033890 [exp] 101 / 7e-27 ND / Lus10011818 [exp] 42 / 0.0001 AT4G14380 59 / 3e-10 unknown protein Lus10021182 [exp] 41 / 0.0003 AT4G14380 52 / 6e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G224200.1 pacid=42805145 polypeptide=Potri.005G224200.1.p locus=Potri.005G224200 ID=Potri.005G224200.1.v4.1 annot-version=v4.1 ATGTCTTGCCTGAATCTGAGGCTTCCGCCAGCCAAGAAGGTATGGAAGAGCTTCACATCCAAATTCCAAAGAAAACTCCACAAACTCAACATGTCCAAAT CTATCAAGAAATCAAAATATCGAACAAACAATATTATTAACAACACGTTTGATCATAAACGTGATGAAACCAGAAAGAGGCCTGCATACCAGCGTCGTGC ACTTCCTTTCAAACAACGTAGCAGCCGCTTTGGCCATGCACACAAAAAATTAGCACCTGTATATATTGATAAGCTCTTTCGAGGGCCTGTAAGTGCTAGT GAGTTGGTGGCAAAGTTTCCGCCAACTACAAAGACTATGAAGATTCTTGATCATCAGGCTGCGACAACAGTAGAGCCAGGAGGAACGAGCATGGGATTAG ATGAGATCATGAGAGGGGAAAGAGGCTGCACGGCGGATGATATGTGGGAGTCATTGGGATTTGCATCTCCCCAGATGCAAGGAATAGATGAAAGGGCTGA GCAGTTCATTTTGACATTCAGGGAAGAGATGGAGATTCAGGAAACGATTGAAAGAGGTTTATAG
AA sequence Show only first row Show all	>Potri.005G224200.1 pacid=42805145 polypeptide=Potri.005G224200.1.p locus=Potri.005G224200 ID=Potri.005G224200.1.v4.1 annot-version=v4.1 MSCLNLRLPPAKKVWKSFTSKFQRKLHKLNMSKSIKKSKYRTNNIINNTFDHKRDETRKRPAYQRRALPFKQRSSRFGHAHKKLAPVYIDKLFRGPVSAS ELVAKFPPTTKTMKILDHQAATTVEPGGTSMGLDEIMRGERGCTADDMWESLGFASPQMQGIDERAEQFILTFREEMEIQETIERGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20500			unknown protein		Potri.005G224200 [exp]	0	1
AT3G03560			unknown protein		Potri.013G073400 [exp]	8.36	0.7790
AT3G29280			unknown protein		Potri.017G090400 [exp]	10.95	0.7656
AT3G24170		ATGR1	glutathione-disulfide reductas...		Potri.001G050000 [exp]	23.32	0.6611	Pt-GR.2,PtrcGR2
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120200 [exp]	29.32	0.7636
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Potri.012G100800 [exp]	39.87	0.7136
AT5G10980			Histone superfamily protein (....		Potri.002G100200 [exp]	40.34	0.6578
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.015G009000 [exp]	42.47	0.7387
AT1G19715			Mannose-binding lectin superfa...		Potri.002G030400 [exp]	42.64	0.7313
AT4G35910			Adenine nucleotide alpha hydro...		Potri.006G051300 [exp]	44.04	0.7400
AT5G46020			unknown protein		Potri.004G051100 [exp]	48.49	0.7343

Compare expression of checked genes

Potri.005G224200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.