Plant FIBer expression Database

ATTIM44.2 (Potri.005G224500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ATTIM44.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36070 545 / 0 ATTIM44-2 translocase inner membrane subunit 44-2 (.1)
AT2G20510 516 / 0 ATTIM44-1 translocase inner membrane subunit 44-1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G038300
[exp]
806 / 0 AT2G36070 584 / 0.0 translocase inner membrane subunit 44-2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003553
[exp]
570 / 0 AT2G36070 524 / 0.0 translocase inner membrane subunit 44-2 (.1)
Lus10022930
[exp]
519 / 0 AT2G36070 464 / 1e-159 translocase inner membrane subunit 44-2 (.1)
Lus10024888
[exp]
449 / 6e-155 AT2G36070 445 / 8e-154 translocase inner membrane subunit 44-2 (.1)
Lus10033894
[exp]
360 / 4e-122 AT2G20510 343 / 8e-116 translocase inner membrane subunit 44-1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0051 NTF2 PF04280 Tim44 Tim44-like domain
Representative CDS sequence
>Potri.005G224500.1 pacid=42802865 polypeptide=Potri.005G224500.1.p locus=Potri.005G224500 ID=Potri.005G224500.1.v4.1 annot-version=v4.1
ATGGCGAGCAGGAAACTTGTTCGAGACTTGGTCCTCTCAAGACAGCCCCTGTTTCTTCACTTCATATCCAAGCAGGTTCCAAGCAGCAGATTACAGGTGG
TATCAAATTACGGGTGCCCGTATTCCGGCTACCGTCGATTTAGCGTCTTCAATGAGTTTTCCAAGAAAGTTAAAGGAGAAGCTCAAATAAATCTAGAATT
TAAACAGTCTGTGAAGGAACTGAAGGAAAAAGCAGAGGAACTGAAAGGGGTGAAAGAAGAGCTCAAAGTAAGAACAAAGCAGACAACTGAGAAGCTGTAC
AAGCATGTGGATTGCGTTTGGACTGAAGCTGAAGCTACTGCGAAAAAGGTTTCTGCCAATGTTAAAGAAAAAGTTTCAGCTGCCACAGAGGAGGTCAAAG
AAACTTTTGGGATTGGGAAAGAAGAGTCATCTGAGTCTGCTGGCACGTCGGCTAAAGATGGTGTTGGTGCTGAAGAATGTAGAAAGGCCTTTCCTGGTGA
AGAAGCAGACAAGCAGACTGGAACCAGTGATACAGCAGAAACATTATTTGGAAAGTTTAAATCAAGCATTCCTTCCTCAAAAGTGTCTTCAGCCTTCCAG
AAATTGAAAGAAGCAAGGGTCAGTGAAATGATGAAGAAAGGATATGATGTTGTGAAGGATGAGTTATATGGTAATACCAATACGAGAAAGCACCTGGAAT
ATACCCCTCCTCCTTCCTTCAGCGGTGAAATAAGTACAAAAACTGACATTGCTGTTCTACCCTCAAAACAGTCTCGATGGAGTAAAAAATGGGAGGCAAT
AAGAGAAAAAATGCAAGGTCATCCTTTATTCAAGCATTTTGCTGGTCTCAGTGAACCTGTTGTGACAAAGGGTCATGAGATTGCAGAGGACATGCGGGAC
AGATGGGAGACAAGTGATAGTCCCATTGTTCACAAAATCCAGGATGTCAGTGATTCCATCTTTCAAGAAAGTGACGCTGCAGCATCAATCAAGGAAATAC
GTCGTCGAGATCTATCATTTTCTTTGATGGATTTTGTGGCAGAAGTTCAGGAAGCTATTAGACCTGTCCTTAATGCTTATATGAAGGGGGATATAGAAAC
TTTGAAGAAATACTGCACCTCTGAAGTGATTAATAGGCGTGAAGCAGAACATAAGGCATTTGAGGCCCATGGTATATTCTTTGATAACAAGATTTTACAT
ATATCTGATGTGGAAGTAAGGGAGATCAAAATGATGGGAACCTCTCCGCTAATCATTGTGGCGTTCCAGACACAGCAAGTCCATTGTATTCGTGATCAAA
ATGGTGCAATAACAGAAGGGGGTCAGGATACAATCCATACTGTATACTATGCATGGGCTATGCGACAAGTAGATCCAGAAGAACTTGGTGGGGGTGCAAT
CTACCCAATATGGAAGCTAATGGAAATGCAACAGCTTGGAGTCCAATCCCTCATCTAG
AA sequence
>Potri.005G224500.1 pacid=42802865 polypeptide=Potri.005G224500.1.p locus=Potri.005G224500 ID=Potri.005G224500.1.v4.1 annot-version=v4.1
MASRKLVRDLVLSRQPLFLHFISKQVPSSRLQVVSNYGCPYSGYRRFSVFNEFSKKVKGEAQINLEFKQSVKELKEKAEELKGVKEELKVRTKQTTEKLY
KHVDCVWTEAEATAKKVSANVKEKVSAATEEVKETFGIGKEESSESAGTSAKDGVGAEECRKAFPGEEADKQTGTSDTAETLFGKFKSSIPSSKVSSAFQ
KLKEARVSEMMKKGYDVVKDELYGNTNTRKHLEYTPPPSFSGEISTKTDIAVLPSKQSRWSKKWEAIREKMQGHPLFKHFAGLSEPVVTKGHEIAEDMRD
RWETSDSPIVHKIQDVSDSIFQESDAAASIKEIRRRDLSFSLMDFVAEVQEAIRPVLNAYMKGDIETLKKYCTSEVINRREAEHKAFEAHGIFFDNKILH
ISDVEVREIKMMGTSPLIIVAFQTQQVHCIRDQNGAITEGGQDTIHTVYYAWAMRQVDPEELGGGAIYPIWKLMEMQQLGVQSLI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G36070 ATTIM44-2 translocase inner membrane sub... Potri.005G224500
[exp]
0 1 ATTIM44.2
AT4G27940 ATMTM1 ARABIDOPSIS MANGANESE TRACKING... Potri.012G032100
[exp]
6.08 0.7333
AT5G41685 Mitochondrial outer membrane t... Potri.018G145502
[exp]
9.27 0.7099
AT5G27380 GSHB, GSH2 glutathione synthetase 2 (.1) Potri.013G026800
[exp]
22.44 0.5866
AT1G20720 RAD3-like DNA-binding helicase... Potri.002G008700
[exp]
24.73 0.6907
AT1G48560 unknown protein Potri.003G188600
[exp]
29.24 0.6684
AT3G18580 Nucleic acid-binding, OB-fold-... Potri.012G058800
[exp]
29.66 0.6758
AT5G05500 MOP10 Pollen Ole e 1 allergen and ex... Potri.010G185400
[exp]
29.69 0.5679
Potri.017G046400
[exp]
33.68 0.6883
AT1G07910 ATRNL, RNL, AtR... ARABIDOPSIS THALIANA RNA LIGAS... Potri.016G083100
[exp]
38.15 0.6268
AT1G04870 PRMT10, ATPRMT1... protein arginine methyltransfe... Potri.018G071200
[exp]
39.47 0.6387

Potri.005G224500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.