Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20515 177 / 8e-58 unknown protein AT2G16630 45 / 7e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G42840 44 / 8e-06 PDF1 protodermal factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038200 [exp] 264 / 3e-92 AT2G20515 189 / 2e-62 unknown protein Potri.005G200900 [exp] 54 / 3e-09 AT2G42840 163 / 4e-48 protodermal factor 1 (.1) Potri.002G060800 [exp] 49 / 2e-07 AT2G42840 167 / 4e-50 protodermal factor 1 (.1) Potri.004G169200 [exp] 49 / 3e-07 AT2G16630 186 / 1e-55 Pollen Ole e 1 allergen and extensin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022928 [exp] 172 / 5e-56 AT2G20515 173 / 3e-56 unknown protein Lus10024890 [exp] 160 / 4e-51 AT2G20515 154 / 2e-48 unknown protein Lus10007352 [exp] 51 / 5e-09 AT2G42840 132 / 3e-39 protodermal factor 1 (.1) Lus10007351 [exp] 53 / 9e-09 AT2G42840 170 / 5e-51 protodermal factor 1 (.1) Lus10026279 [exp] 43 / 4e-05 AT2G16630 300 / 2e-100 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10042394 [exp] 42 / 6e-05 AT2G16630 281 / 4e-93 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G224600.1 pacid=42802445 polypeptide=Potri.005G224600.1.p locus=Potri.005G224600 ID=Potri.005G224600.1.v4.1 annot-version=v4.1 ATGGGTATGCCTTTTCTACTGAGTCGACTCGTTCTCATCATCTTTGTTGCTCACTTTGCAGCTTCAAAAGCAGCAGCCACAAGACCTGGTTTTATCTACA CAAGAACCAGAGGAAGATGCACTCCCCAGTTCTGGTGCAGCAGGAGAGAGTCATGGCCAAGGATGGTCCCGCAGAGGGCAACAGTATCAAAGGTGTTTGG ATCAGGAGTATTTGAGCGGTACGGATCGGATGTGACCTTGCTGGAATCAACTACTAGGAACGATGATGAGAACGCATTTGCTGGGTTGTTGAAGCAGGCG AGTGCAGCCCTTCTGAACTCATATGCTAGAGAGGGGTTTCCATACTCTGCTTGGGAAGTGAAGACTCTGCTGATACAGGCATTGGTCTCCAAGGAGGCTG CAGCCACTCAAGCCAAGCAGTTCTCTGTTGCCAACGAAGCTTGTAATTAA
AA sequence Show only first row Show all	>Potri.005G224600.1 pacid=42802445 polypeptide=Potri.005G224600.1.p locus=Potri.005G224600 ID=Potri.005G224600.1.v4.1 annot-version=v4.1 MGMPFLLSRLVLIIFVAHFAASKAAATRPGFIYTRTRGRCTPQFWCSRRESWPRMVPQRATVSKVFGSGVFERYGSDVTLLESTTRNDDENAFAGLLKQA SAALLNSYAREGFPYSAWEVKTLLIQALVSKEAAATQAKQFSVANEACN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20515			unknown protein		Potri.005G224600 [exp]	0	1
					Potri.016G052301 [exp]	5.19	0.8864
AT5G49525			unknown protein		Potri.005G011400 [exp]	7.61	0.8356
AT2G25060		AtENODL14	early nodulin-like protein 14 ...		Potri.006G264600 [exp]	8.06	0.8998
AT3G17350			unknown protein		Potri.008G099800 [exp]	8.60	0.8921
AT4G38660			Pathogenesis-related thaumatin...		Potri.009G132500 [exp]	23.62	0.8650
AT3G17350			unknown protein		Potri.010G152900 [exp]	24.81	0.8669
AT2G46170			Reticulon family protein (.1.2...		Potri.002G165400 [exp]	25.92	0.8610
AT4G08330			unknown protein		Potri.005G070600 [exp]	26.00	0.8789
					Potri.006G055900 [exp]	29.58	0.8742
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	29.88	0.8463

Compare expression of checked genes

Potri.005G224600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.