Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CPC902,TTN8.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54670 1540 / 0 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G48600 141 / 1e-33 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT3G47460 84 / 4e-16 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G62410 79 / 1e-14 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT2G27170 66 / 1e-10 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT5G61460 57 / 1e-07 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07660 56 / 1e-07 SMC6A structural maintenance of chromosomes 6A (.1) AT5G15920 50 / 8e-06 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G083200 [exp] 137 / 2e-32 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.003G108400 [exp] 84 / 7e-16 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.001G125000 [exp] 82 / 2e-15 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.009G155200 [exp] 66 / 1e-10 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.001G262600 [exp] 54 / 5e-07 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Potri.003G107700 [exp] 49 / 3e-05 AT5G61460 1237 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024895 [exp] 1579 / 0 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 1574 / 0 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10021268 [exp] 855 / 0 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013583 [exp] 373 / 7e-119 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013582 [exp] 350 / 8e-112 AT3G54670 292 / 2e-91 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013581 [exp] 177 / 1e-51 AT3G54670 167 / 4e-51 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10005240 [exp] 128 / 1e-29 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10030681 [exp] 128 / 2e-29 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10027215 [exp] 82 / 2e-15 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10036169 [exp] 62 / 2e-09 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02463 [poplar] [flax] SMC_N RecF/RecN/SMC N terminal domain CL0023 [poplar] [flax] PF06470 [poplar] [flax] SMC_hinge SMC proteins Flexible Hinge Domain
Representative CDS sequence Show only first row Show all	>Potri.005G224900.2 pacid=42805434 polypeptide=Potri.005G224900.2.p locus=Potri.005G224900 ID=Potri.005G224900.2.v4.1 annot-version=v4.1 ATGCCTTCCATGTCTTCTCCAGGCAAAATCCTGAAATTGGAGATGGAAAACTTCAAATCCTACAAAGGTCTTCAAACAATTGGTCCATTCAAGGATTTCA CAGCCATAATCGGCCCAAACGGAGCTGGAAAATCTAATTTAATGGACGCTATCAGTTTCGTTCTCGGTGTCCGTACTGGTCATCTCCGTGGAGCGCAGCT GAAAGACCTTATTTACGCGTACGACGACCGTGAAAAGGAGCAAAAAGGACGGAGAGCCTTCGTGCGCTTGGTTTACCTGTTGCCTGACGGGTCGGAGCTC CAATTCACCCGGGCTATTACTAGCTCTGGTGGCAGTGAGTACCGTATTGATGGCAGGGTTGTTAATTGGGATGAATACAATGCCAGGTTAAAAGAGTTGG GCATTCTTGTTAAGGCCAGGAATTTTTTGGTGTTTCAGGGCGACGTGGAGTCCATTGCATCTAAAAACCCAAAAGAGCTGACCGCACTTTTTGAGCAGAT ATCTGGATCTGAAGATCTCAAGAGAGAATATGAAGATCTTGAAGAAAAGAAAGCCAGGGCTGAAGAAAAATCAGCTCTTGTTTATCAGAAAAAGAGAACA GTAGTTATGGAGAGGAAGCAAAAGAAAGAGCAGAAGGAAGAAGCGGAAAAGCATCTACGTTTGCAAGATCAATTGAAATCTTTGAAGAAAGAACACTTTC TATGGCAATTGTATACCATACACAATGACTCAATTAAGATGAATGCTGAACTTGATGCTGAAAAGAGGAATCAAGAAGATCTCATGCAAGAGCTTGAGAA GTTTGGACATGAAGCAGACAAGAAGAAGAAGGAACAAGAAAAATACCAGAAAGAGATTACGCAATGTGAAAGGAAGATCAAAGAGAGAAGTTTAAAACTT GACAAGCATCAACCAGAACTTCTTAAATTAAATGAGGAAATGTCACGCATAAATTCAAAAATTAAGAGCAGTCGTAAAGAGCTTGAGAGGAAAATGGTAG AAAGGAGGAAGCATGCTGATGAGATAAAAGAGCTGGAGAGTGGCATTCAAGATCTGAGTTCTAAAATGGATGGTCTTCGTGAAAAAAGTCGAGATGTTGG TGGAAAACTTCCCTTGGCTGACGGTCAACTACAAGAATACTTCCAAATTAAGGAGGACGCTGGCATGAAAACTGTCAGGCTAAGGGATGAAAAGGAGGTT CTGGACAGGCAGCAACATGCTGATATGGAAGCTCAAAAGAATTTGGAAGAAAACCTCCAACAGTTGGAAAATCGGGCACATGAACTGGATTCCCAGGACA AACAAATGCGTGAAAGAATGAAAAAGATTCTTGATGCTTCTACAAAGCATAAAAATGAGGTGATTGATCTGAAAAAGGAATTGCGTGAGATGCAAGATAA ACATCGGGATTCCAGGCACAAATATGAGAACTTGAAGTCCAAAATTGGTGAAATAGAAAACCAGCTACGTGAATCGAGAGCAGATAGACATGAGAATGAG AGGGATGCTAAGCTGTTTCAAGCAGTTGAGACTCTCAAACGCCTATTTCAAGGAGTTCATGGCCGGATGATTGATCTCTGCAGGCCAACCCAGAAGAAGT ACAACCTTGCTGTTACTGTTGCTATGGGGAAGTTCATGGATGCAGTTGTGGTTGAGGATGAAAACACGGGGAAAGAGTGCATCAAGTATTTGAAAGACCA AAGGCTTCCTCCTCAGACATTTATACCTCTTCAATCAGTTCGTGTAAAGCCAGTAATTGAAAGGTTGCGTACCTTAGGTGGTACTGCAAAGCTGGTCTTT GATGTGATCCAATTTGATCCTGTCCTGGAGAAGGCAATTCTTTTTGCTGTTGGAAATACTCTAGTGTGTGATGAACTTGATGAAGCCAAGGTTCTTAGCT GGACTGGGGAGAGATTTAGAGTTGTAACAGTAGATGGGATCCTGCTCACAAAGTCTGGCACAATGACTGGTGGCACCAGTGGTGGAATGGAAGCAAAGTC AAAACAGTGGGATGATAAAAAGATTGAAGGCCTGAAAAGGAAGAAAGAACAACTTGAGTCTGAGTTGGAGGAGCTTGGGTCAATCAGGGAGATGCATTTA AAGGAGTCTGAAGCATCAGGAAAAATGAGTGGGCTTGAAAAGAAGATTCAGTATGCAGAGATTGAGAAGAAAAGTATCGAGGACAAACTTGCAAACATGA AAAAGGAGAAGCGGGTTATTAAAGAAGAAATTGACCGTATAAACCCTGAACTTCGTAAGTTAAAAGAAACTGTCGAAAAGAGGGCCACTGAAATTAGGAA GCTGGAGAAGAGAATCAATGACATTGTTGACCGAATATATAGAAAATTTAGTGAGGATGTTGGGGTGGAAAATATTCGTGAATATGAAGAAAACCATGTT AAGGCTGCACAACACATGGCTGAAGAAAGGTTAAGCTTGAGTAACCAGCTAGCAAAGCTGAAGTACCAGTTGGAGTACGAGCAAAAACGGGACATGGAAT CACGAATTAGAAAACTAGAATCTTCTCTCGCTGCTTTAGAAAATGATTTGAAACAAGTTCAGAAAAAAGAGGCCCAAATTAAATTAGCATCTGATAAAGC TACTGATGAGATTAATAAATGGAAGGAAGAAATGAAAGAGTGGAAATCCAAGTCAGAAGAGTGCGCAAATGAGATACGTGAATGGACGAAGAAGGGTTCT GCAGTTACAAGCAACTTATCTAAGCTTACCCGTCTTATAAACTCAAAGGAGACACAGATTGCACAGCTATCTTCCTGGAAGCAGGATATAGTGGAGAAGT GTGAATTAGAAAATATAAACCTTCCCACTGTTTCTGACCCAATGGACATTGACTCGCCAATTCCTGGGCCGGATTATGATTTTAGTCAGCTAAATAGATC TCTTCAGGATAGGAGACCTTCTGTCAGAGAGAAGATTGAGGCAGATTTTAAGCAAAAGATAGATGCCTTGATATCAGAAATTGAAAAAACCGCACCAAAC TTGAAGGCACTGGATCAATATGAGGCTCTGAGAGAGAGAGAGAGGGTAGTCACTGAAGAGTTTGAAGCAGCCAGAAAGGAGGAGAAGCAAATAGCTGATT CTTACAATGGAGTTAAGCAGAGAAGGTACGAGTTGTTTATGGGAGCTTTCAACCACATATCAAATAGTATTGATAAGATTTACAAACAATTGACAAAGAG CAGCAATCATCCATTGGGCGGAATGGCATATTTGAGCTTAGAAAACGAGGATGATCCTTTTCTACACGGTATCAAATACACTGCTATGCCACCACAAAAG CGTTTTCGAGATATGGAACAGCTCTCTGGTGGGGAGAAGACTGTTGCAGCGCTGGCATTACTCTTTTCCATCCACAGCTACAAGCCTTCACCATTTTTCA TACTGGATGAAGTCGATGCTGCATTGGATAATTTAAATGTTGCAAAGGTAGCTGGATTCATTCGAGCAAGATCATGTGAAGGAACCAGGGGTATTGTGGA TGCTGATGGTGGCAGTGGTTTTCAGAGTATCGTGATCTCTCTGAAGGATAGCTTTTATGACAAGGCCGAAGCATTGGTCGGGGTTTACAGGGACTCTGAG AGGAGTTGCTCAAGAACTCTGACGTTTGACCTGTCAGTATATCGACCATCTTGA
AA sequence Show only first row Show all	>Potri.005G224900.2 pacid=42805434 polypeptide=Potri.005G224900.2.p locus=Potri.005G224900 ID=Potri.005G224900.2.v4.1 annot-version=v4.1 MPSMSSPGKILKLEMENFKSYKGLQTIGPFKDFTAIIGPNGAGKSNLMDAISFVLGVRTGHLRGAQLKDLIYAYDDREKEQKGRRAFVRLVYLLPDGSEL QFTRAITSSGGSEYRIDGRVVNWDEYNARLKELGILVKARNFLVFQGDVESIASKNPKELTALFEQISGSEDLKREYEDLEEKKARAEEKSALVYQKKRT VVMERKQKKEQKEEAEKHLRLQDQLKSLKKEHFLWQLYTIHNDSIKMNAELDAEKRNQEDLMQELEKFGHEADKKKKEQEKYQKEITQCERKIKERSLKL DKHQPELLKLNEEMSRINSKIKSSRKELERKMVERRKHADEIKELESGIQDLSSKMDGLREKSRDVGGKLPLADGQLQEYFQIKEDAGMKTVRLRDEKEV LDRQQHADMEAQKNLEENLQQLENRAHELDSQDKQMRERMKKILDASTKHKNEVIDLKKELREMQDKHRDSRHKYENLKSKIGEIENQLRESRADRHENE RDAKLFQAVETLKRLFQGVHGRMIDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIKYLKDQRLPPQTFIPLQSVRVKPVIERLRTLGGTAKLVF DVIQFDPVLEKAILFAVGNTLVCDELDEAKVLSWTGERFRVVTVDGILLTKSGTMTGGTSGGMEAKSKQWDDKKIEGLKRKKEQLESELEELGSIREMHL KESEASGKMSGLEKKIQYAEIEKKSIEDKLANMKKEKRVIKEEIDRINPELRKLKETVEKRATEIRKLEKRINDIVDRIYRKFSEDVGVENIREYEENHV KAAQHMAEERLSLSNQLAKLKYQLEYEQKRDMESRIRKLESSLAALENDLKQVQKKEAQIKLASDKATDEINKWKEEMKEWKSKSEECANEIREWTKKGS AVTSNLSKLTRLINSKETQIAQLSSWKQDIVEKCELENINLPTVSDPMDIDSPIPGPDYDFSQLNRSLQDRRPSVREKIEADFKQKIDALISEIEKTAPN LKALDQYEALRERERVVTEEFEAARKEEKQIADSYNGVKQRRYELFMGAFNHISNSIDKIYKQLTKSSNHPLGGMAYLSLENEDDPFLHGIKYTAMPPQK RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRARSCEGTRGIVDADGGSGFQSIVISLKDSFYDKAEALVGVYRDSE RSCSRTLTFDLSVYRPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	0	1	CPC902,TTN8.3
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	1.00	0.9475	TTN8.2
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Potri.014G071400 [exp]	1.41	0.9279
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	1.73	0.9229
AT5G07400	FHA		forkhead-associated domain-con...		Potri.012G111800 [exp]	3.46	0.9062
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.008G149900 [exp]	4.00	0.9221
AT3G06480			DEAD box RNA helicase family p...		Potri.010G152400 [exp]	5.00	0.8859
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	5.00	0.9187	HAC901,Pt-HAC1.4
AT1G15780			unknown protein		Potri.001G204900 [exp]	5.29	0.9134
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	5.47	0.9104
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.009G158400 [exp]	6.24	0.9056

Compare expression of checked genes

Potri.005G224900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.