Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06210 402 / 8e-139 ENTH/VHS/GAT family protein (.1.2) AT5G16880 249 / 6e-79 Target of Myb protein 1 (.1.2.3) AT4G32760 105 / 3e-24 ENTH/VHS/GAT family protein (.1.2) AT1G76970 101 / 2e-23 Target of Myb protein 1 (.1) AT5G01760 98 / 6e-22 ENTH/VHS/GAT family protein (.1) AT1G21380 97 / 2e-21 Target of Myb protein 1 (.1) AT2G38410 92 / 1e-19 ENTH/VHS/GAT family protein (.1) AT3G08790 88 / 2e-18 ENTH/VHS/GAT family protein (.1) AT5G63640 69 / 2e-12 ENTH/VHS/GAT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038000 [exp] 667 / 0 AT1G06210 409 / 7e-142 ENTH/VHS/GAT family protein (.1.2) Potri.019G050000 [exp] 266 / 1e-85 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.013G082500 [exp] 257 / 4e-82 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.002G075500 [exp] 114 / 2e-27 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.018G039100 [exp] 106 / 1e-24 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 105 / 3e-24 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 103 / 7e-24 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.016G131900 [exp] 103 / 1e-23 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 101 / 8e-23 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024896 [exp] 455 / 2e-160 AT1G06210 387 / 3e-134 ENTH/VHS/GAT family protein (.1.2) Lus10022922 [exp] 437 / 2e-152 AT1G06210 369 / 2e-126 ENTH/VHS/GAT family protein (.1.2) Lus10013788 [exp] 243 / 2e-76 AT5G16880 509 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10039144 [exp] 233 / 1e-72 AT5G16880 516 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10040912 [exp] 228 / 2e-70 AT5G16880 539 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10005924 [exp] 227 / 4e-70 AT5G16880 541 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10014155 [exp] 112 / 2e-26 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 111 / 3e-26 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10028649 [exp] 110 / 6e-26 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10018948 [exp] 104 / 2e-24 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF00790 [poplar] [flax] VHS VHS domain CL0009 [poplar] [flax] PF03127 [poplar] [flax] GAT GAT domain
Representative CDS sequence Show only first row Show all	>Potri.005G225000.8 pacid=42803648 polypeptide=Potri.005G225000.8.p locus=Potri.005G225000 ID=Potri.005G225000.8.v4.1 annot-version=v4.1 ATGGACAAGCTGAAATTATCTGAATGGGGTGAACGGTTGAAGACTGGTGGGGCTCAGATGAGTCGACTTGTAAGTGATAAGGTGAAAGAAATACTGCAAA CCCCAACACCTGAATCGAAGATGGTTGATGAAGCTACGTTAGAGACAATGGAGGAGCCCAACTGGGGTTTGAATCTGAGGATATGTTCGATGATTAATAG CCAAGAGTTTAGTGGTACGGAGATTGTTAAGGCTATAAAGAGGAAGATTTCGGGCAAGAATTCGGTGAGCCAAAGGCTGAGTCTTGATTTGTTGGAGGCC TGTACTTCGAATTGTGAGAAGGTGTTCTCCGAGGTGGCGTCTGAGAAGGTGTTGGATGAGATGGTTAGGATGATCGAGATTCCGCAAACGGATCAGGGGA ATCGTGATCGAGCTTTGCAGTTGATTAGGGCTTGGGGAGAGTCCGAGGATCTTGAGTATCTGCCTGTCTTTCACCAGACCTATATGAGCTTGAAAGAAAG AAGTCTGCCTACACCACCAGTTGGAGATGGAAGTTCATTCCCCATGCAATATTCGTTGGAGTCGTTTGTTCACCAGGATCCATTGTCTCCTCCTGAAAGC TATCCTATTCCTGACACGGGATTGCATGGTGCAGATCATGGTACTCTTCCATATAACTCTGGGGGGGTATCAATTGAGGAAAAGAATGAAACACTTGTAA CAACTCGGAACAGCCTGGAACTTCTTTCTAGTATTTTGAATGCTGAAACTGAGCCAAAACCCGTTAAGCAGGATGATCTTACAGTAAGCTTGGTGGACAA GTGCAAGCAGTCACAGCCTGTCATTCAGAGGATCATAGAGAGCACCACTGATGACGAGGCAATGCTTTTTGAGGCCCTGAATCTCCATGATGAGCTCCAA CAAGTCATTCTCCGATACAACGAGTTGGAAGCTGGTATAAAATCCAGAGAGCACCTGCCTGAAAGTTCCAGTAACACCGGGGCCAATATATTGCCTGCTC AAGTTGAACCTCATAATGAAACCAAGATAGCAGATACTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAGGATAGCAGATCCTCCAGAAGG GCCTGCTCAAGCTGAACCTCGTAAGGAAACCAGGATAGCAGATCCTCCAGAAGGGCCTGCTCAAGCTGAACCTCGTAATGAAACCAAGACAGCAGATCCC CCAAAAGGAGAGAGTGCTGAATTTAGCAGCCAGAAGAAAATTGACGAGCGAGAATTCAGTTAA
AA sequence Show only first row Show all	>Potri.005G225000.8 pacid=42803648 polypeptide=Potri.005G225000.8.p locus=Potri.005G225000 ID=Potri.005G225000.8.v4.1 annot-version=v4.1 MDKLKLSEWGERLKTGGAQMSRLVSDKVKEILQTPTPESKMVDEATLETMEEPNWGLNLRICSMINSQEFSGTEIVKAIKRKISGKNSVSQRLSLDLLEA CTSNCEKVFSEVASEKVLDEMVRMIEIPQTDQGNRDRALQLIRAWGESEDLEYLPVFHQTYMSLKERSLPTPPVGDGSSFPMQYSLESFVHQDPLSPPES YPIPDTGLHGADHGTLPYNSGGVSIEEKNETLVTTRNSLELLSSILNAETEPKPVKQDDLTVSLVDKCKQSQPVIQRIIESTTDDEAMLFEALNLHDELQ QVILRYNELEAGIKSREHLPESSSNTGANILPAQVEPHNETKIADTPEGPAQAEPRNETRIADPPEGPAQAEPRKETRIADPPEGPAQAEPRNETKTADP PKGESAEFSSQKKIDEREFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.005G225000 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121350 [exp]	3.46	0.8912
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Potri.002G185400 [exp]	4.69	0.8818
AT2G17350			unknown protein		Potri.009G169200 [exp]	4.79	0.9038
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.003G049100 [exp]	7.07	0.8970
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.002G179800 [exp]	10.77	0.8954
AT3G05700			Drought-responsive family prot...		Potri.014G125500 [exp]	10.95	0.8604
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.007G029200 [exp]	12.68	0.8906
AT1G18265			Protein of unknown function, D...		Potri.009G078800 [exp]	15.32	0.8930
AT3G09180			unknown protein		Potri.016G070700 [exp]	17.88	0.8409
AT1G18660			zinc finger (C3HC4-type RING f...		Potri.012G068100 [exp]	18.76	0.8868

Compare expression of checked genes

Potri.005G225000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.