Plant FIBer expression Database

Potri.005G225100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31140 274 / 2e-94 Peptidase S24/S26A/S26B/S26C family protein (.1)
AT1G06200 266 / 2e-91 Peptidase S24/S26A/S26B/S26C family protein (.1)
AT1G29960 52 / 1e-08 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1)
AT1G23465 52 / 2e-08 Peptidase S24/S26A/S26B/S26C family protein (.1)
AT1G53530 47 / 1e-06 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
AT3G08980 45 / 4e-06 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G037900
[exp]
385 / 2e-138 AT1G06200 264 / 2e-90 Peptidase S24/S26A/S26B/S26C family protein (.1)
Potri.007G071400
[exp]
55 / 2e-09 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Potri.005G092900
[exp]
47 / 1e-06 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Potri.001G380400
[exp]
45 / 4e-06 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Potri.016G115100
[exp]
44 / 1e-05 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022921
[exp]
332 / 3e-117 AT2G31140 282 / 1e-97 Peptidase S24/S26A/S26B/S26C family protein (.1)
Lus10024897
[exp]
194 / 9e-64 AT2G31140 186 / 6e-61 Peptidase S24/S26A/S26B/S26C family protein (.1)
Lus10005571
[exp]
49 / 3e-07 AT1G53530 213 / 1e-71 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Lus10025393
[exp]
47 / 1e-06 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Lus10013703
[exp]
47 / 4e-06 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2)
Lus10002492
[exp]
44 / 1e-05 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1)
Lus10004822
[exp]
42 / 9e-05 AT3G08980 190 / 9e-63 Peptidase S24/S26A/S26B/S26C family protein (.1)
PFAM info
Representative CDS sequence
>Potri.005G225100.2 pacid=42803120 polypeptide=Potri.005G225100.2.p locus=Potri.005G225100 ID=Potri.005G225100.2.v4.1 annot-version=v4.1
ATGGTTTCTGTATCGACTTGGTTCCGTTACATAGCCAACAAACTCGACTACTCTGTTTCTCTCAGCTATAAGAGCTATAAGGGTGGCTTAATCAATGATA
AAGAAGTCGTTGATTCAGTTTGGAAAAATCTACTTCAGGGAAAGTTGACCTTTTTACACTGGAATAAAGGACAGGAAATGGCCCCAACAATTGGAGACCA
GGGGGGGACCCTTCTTGTTCGCAAGTTACCATCTGCTGATCCAATGCGTGTTTTTGTCGGAGATGTAGTGCTTTTGAAGGATCCTGAGAAGTCAGATAAC
TTTCTTGTCAGAAGATTAGCTGCTATTGAAGGTTATGAAATGGCGTCTACTGAGGAAAAAGATGAGCCATTTGTTCTTGACAAGGATGAATGTTGGGTAT
TGGCTGACAATGAGAAGTTGAAAGCCAAGGAAGCCAATGACAGTCGAAAATTTGGTCCAATTTCCATGTCAAACATAGTTGGCCGAGTCATATACTGTCT
GCAAACAGCTGTAGACCATGGTCCTGTACAGAACAGCCATTTCAGCTCGAGAAAGGACTCTCCAGTGCTGGAGGTGGAATTGGATGTTGAAGAGATGGCA
AAACATCACAAAGCATAG
AA sequence
>Potri.005G225100.2 pacid=42803120 polypeptide=Potri.005G225100.2.p locus=Potri.005G225100 ID=Potri.005G225100.2.v4.1 annot-version=v4.1
MVSVSTWFRYIANKLDYSVSLSYKSYKGGLINDKEVVDSVWKNLLQGKLTFLHWNKGQEMAPTIGDQGGTLLVRKLPSADPMRVFVGDVVLLKDPEKSDN
FLVRRLAAIEGYEMASTEEKDEPFVLDKDECWVLADNEKLKAKEANDSRKFGPISMSNIVGRVIYCLQTAVDHGPVQNSHFSSRKDSPVLEVELDVEEMA
KHHKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G31140 Peptidase S24/S26A/S26B/S26C f... Potri.005G225100
[exp]
0 1
AT4G26410 Uncharacterised conserved prot... Potri.001G001300
[exp]
6.32 0.7196
AT5G40810 Cytochrome C1 family (.1.2) Potri.004G203800
[exp]
9.64 0.7153
AT2G27730 copper ion binding (.1) Potri.009G163100
[exp]
10.09 0.6420
AT5G09570 Cox19-like CHCH family protein... Potri.001G282900
[exp]
10.29 0.7344
AT5G09570 Cox19-like CHCH family protein... Potri.009G078100
[exp]
11.13 0.7151
AT1G80860 ATPLMT ARABIDOPSIS PHOSPHOLIPID N-MET... Potri.001G044200
[exp]
11.22 0.6654
AT3G56490 HIT3, HINT1 HISTIDINE TRIAD NUCLEOTIDE-BIN... Potri.016G023700
[exp]
11.95 0.6762
AT2G29530 TIM10 Tim10/DDP family zinc finger p... Potri.009G039600
[exp]
13.22 0.7121 TIM10.1
AT2G35795 Chaperone DnaJ-domain superfam... Potri.006G131200
[exp]
15.68 0.7120
AT5G53045 unknown protein Potri.015G011500
[exp]
16.73 0.6747

Potri.005G225100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.