Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23280 357 / 5e-119 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 284 / 1e-91 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT4G35450 75 / 2e-14 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 74 / 5e-14 AKR2B ankyrin repeat-containing 2B (.1) AT2G38195 59 / 2e-09 RING/U-box superfamily protein (.1.2) AT2G38220 57 / 1e-08 RING/U-box superfamily protein (.1) AT2G34920 55 / 1e-07 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT4G27780 54 / 1e-07 ACBP2 acyl-CoA binding protein 2 (.1) AT2G38185 54 / 1e-07 RING/U-box superfamily protein (.1.2.3.4) AT4G24204 49 / 9e-07 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070750 [exp] 479 / 3e-166 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070800 [exp] 470 / 7e-163 AT3G23280 502 / 2e-176 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.008G167600 [exp] 452 / 9e-156 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G011300 [exp] 261 / 3e-84 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.004G210100 [exp] 63 / 1e-10 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 63 / 1e-10 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.006G100400 [exp] 62 / 6e-10 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.001G251900 [exp] 62 / 6e-10 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.016G116300 [exp] 59 / 3e-09 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009035 [exp] 415 / 6e-141 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009674 [exp] 401 / 9e-136 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033896 [exp] 379 / 7e-128 AT3G23280 294 / 7e-96 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033895 [exp] 171 / 5e-46 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003551 [exp] 150 / 3e-42 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10020272 [exp] 69 / 4e-12 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 68 / 6e-12 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10013859 [exp] 66 / 1e-11 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10001605 [exp] 64 / 1e-10 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10026575 [exp] 58 / 9e-09 AT2G17390 427 / 2e-150 ankyrin repeat-containing 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies) CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.005G225300.2 pacid=42803551 polypeptide=Potri.005G225300.2.p locus=Potri.005G225300 ID=Potri.005G225300.2.v4.1 annot-version=v4.1 ATGGGCCAAAGTCTTGATTCAATGACGCAAAAACAATCCAAAGACGAACTTCTGTATCAGCTGGCTATTGCCGGAAATGTGGACGCCGTTAAAGCTCTTT GTAGTGAAGGGGCTATCCTTGAGTGGATTGACAGAGATGGAAAGACCCCTCTTATAGTGGCTTGTATGGATTCTGGATTGTATAATGTCGCCAAAGTTTT GATTGAAATGGGAGCCAATGTCAATGCTTATCGTCCAGGGCGTCATGCGGGTACCCCTTTACATCATGCGGTGAAAAGAGGCCTGGAGCAGACTGTTAAG TTACTTCTCTCAAGTGGAGCGAATGCTTTAGTGAGAAATGATGATTGTCAAACTGCACTTGATGTTGCTAGAATAAAGGGGAATATAAATATTGTGCGCA CTATTGAGAGTCACATTTGCTATTTCACTGGCTGGCTGCGGGAGTTTTATGGTCCAGGATTTCTCAGAGCATTCGCTCCTCAATTTTTATCAAGAAAAAT CTGGGCTGCTGTTATACCACAAGGTTCCAGCAATCCCATGACGCCCAAGAAGCTGGAGCTTGTGATATATCCTTCTTCCCAGGATGTACAACCTCGTACA GTTATTGCTCTTTGGAATGCTGAAATTGAGGAACCTAACTTCAATAGACCAGATCCTGAGCTTACTATTTTTGACCAGTCAACTAAAACTCAATACAAAC TTGCATCTGCCAATGAGGGTGATAAACAGCAGCTTCACTGGTTATATGATGCATGCAGCGGAATTCCCCAGGTTATGCTGCCACCAATGTATGGCAATCC TCCAACCACAGTTCCAGTGGTTGGTCATCATACTTCAGCAGAAGCTGTGGGATCGGCAATGGCAATAGGTGGTGGATCCATTCAGTCTACCACAGAGGAC AATCCACTACATCCAAATACTCATCAGAGCTCTGAAGTAATTAATGCAAACGGCTGGGAAGACCCTGTGCGTGGTGATAGCCACAACAGGTGGGGCGTGA CTGTTGCATCCACACATTCAGAAGCACGCAGCAGTGGATGGATGGGCGAGGCACCAAAGGAAGACCACAATGGATGCGCTGTGCCTAATATGGGGCCAAG TGGCAGTCAAGATCATGTACAAACCCGTTATGATATCCCCCCTGTTTCTGAAACTAGTGGTGGAAATACTGCATCAGTCCCATCAGCTCCATCAGCTCCA CCAATTCCTGATGAGGAATTGGATGCTGGGCCTATCCATTATCCATCATTTGATTTTAGTCTACTGGACTTGTCCGTTCCAGCCATAGAGCTTGGAGCTT CTGTAACAAGTGATGTGAACAAGGGAGGTACTTCTTCTTCATGTATAATATGTTGGGAAGCTCCTGTTGAAGGTGCTTGCATTCCTTGCGGTCACATGGC TGGTTGTATGACTTGTTTGAGTGAGATCAAAGCTAAGAAAGGTGTTTGCCCGATTTGCCGATCCAATATAAACCAGGTTACAAGGCTTTATGCTGTCTGA
AA sequence Show only first row Show all	>Potri.005G225300.2 pacid=42803551 polypeptide=Potri.005G225300.2.p locus=Potri.005G225300 ID=Potri.005G225300.2.v4.1 annot-version=v4.1 MGQSLDSMTQKQSKDELLYQLAIAGNVDAVKALCSEGAILEWIDRDGKTPLIVACMDSGLYNVAKVLIEMGANVNAYRPGRHAGTPLHHAVKRGLEQTVK LLLSSGANALVRNDDCQTALDVARIKGNINIVRTIESHICYFTGWLREFYGPGFLRAFAPQFLSRKIWAAVIPQGSSNPMTPKKLELVIYPSSQDVQPRT VIALWNAEIEEPNFNRPDPELTIFDQSTKTQYKLASANEGDKQQLHWLYDACSGIPQVMLPPMYGNPPTTVPVVGHHTSAEAVGSAMAIGGGSIQSTTED NPLHPNTHQSSEVINANGWEDPVRGDSHNRWGVTVASTHSEARSSGWMGEAPKEDHNGCAVPNMGPSGSQDHVQTRYDIPPVSETSGGNTASVPSAPSAP PIPDEELDAGPIHYPSFDFSLLDLSVPAIELGASVTSDVNKGGTSSSCIICWEAPVEGACIPCGHMAGCMTCLSEIKAKKGVCPICRSNINQVTRLYAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.005G225300 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	3.46	0.8706
AT5G01260			Carbohydrate-binding-like fold...		Potri.009G044800 [exp]	6.48	0.8537
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G038400 [exp]	8.48	0.8410
AT5G27460			Tetratricopeptide repeat (TPR)...		Potri.005G160100 [exp]	10.24	0.8478
AT1G09730			Cysteine proteinases superfami...		Potri.017G044000 [exp]	10.39	0.8500
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007300 [exp]	10.95	0.8003
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.001G079300 [exp]	11.61	0.7718
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.002G028300 [exp]	12.96	0.8314
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.001G243400 [exp]	14.69	0.8242
AT5G23390			Plant protein of unknown funct...		Potri.008G003000 [exp]	21.67	0.7471

Compare expression of checked genes

Potri.005G225300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.