Plant FIBer expression Database

Potri.005G225700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54690 540 / 0 SETH3 Sugar isomerase (SIS) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G037400
[exp]
643 / 0 AT3G54690 514 / 0.0 Sugar isomerase (SIS) family protein (.1)
Potri.012G099600
[exp]
42 / 0.0006 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003549
[exp]
596 / 0 AT3G54690 537 / 0.0 Sugar isomerase (SIS) family protein (.1)
Lus10033902
[exp]
593 / 0 AT3G54690 543 / 0.0 Sugar isomerase (SIS) family protein (.1)
Lus10024902
[exp]
189 / 2e-58 AT3G54690 177 / 6e-54 Sugar isomerase (SIS) family protein (.1)
Lus10032625
[exp]
43 / 0.0002 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1)
Lus10043123
[exp]
43 / 0.0003 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00571 CBS CBS domain
CL0067 SIS PF01380 SIS SIS domain
Representative CDS sequence
>Potri.005G225700.1 pacid=42803350 polypeptide=Potri.005G225700.1.p locus=Potri.005G225700 ID=Potri.005G225700.1.v4.1 annot-version=v4.1
ATGGGTTCACTTCCACCGTTCCTAGACCTCCCTTCGCCAGATGCCAAGTTCCAGCAAATTGACCAAACCACCCTTCTCAACCTCTTCAAATCCCAACAAA
ACCACCTCAACTACTTCTTCCAAAACCTAAATCTCTCCCAAGCCTTAACCTTCACCCAAACGCTTCTCAACTGTAACGGCACTATCTTTTTCTCCGGCGT
CGGCAAGTCCGGCTTCGTCGCCAATAAAATCTCCCAAACCCTAATATCTCTCGGCATTCGCGCCGGTTTTCTCTCCCCTGTTGACGCACTCCATGGCGAC
ATCGGGGCCCTCTCCTCCTCCGATATCCTCGTCCTCTTCAGCAAATCTGGGAACACCGAGGAGTTGCTCCGTCTTGTTCCGTGTGCCAAGGCGAAAGGTG
CGTATTTGGTGTCGGTGACGTCCGTTGAAGGCAATGCGCTCACGGCTGTTTGTGATATGAATGTGCATTTGCCTTTGGAGAGGGAATTGTGTCCATTTGA
TTTGGCTCCTGTGACTTCCACAGCGATCCAGATGGTTTTTGGGGATACCGTCGCGATTGCGTTGATGGGAGCGAGGAATTTGAGTAAGGAAGAGTATGCC
GCTAATCATCCTGCTGGAAGGATCGGCAAGAGCTTGATTTTCAAGGTTAAGGATGTGATGAAGAAGCAAAATGAGCTTCCAATCTGTAAGGAAGGAGACT
TGATAATGGATCAGCTAGTGGAGTTAACGAGTAAAGGATGCGGCTGCCTGCTTGTTATAGATGAGGATAGTCACCTGATCGGAACATTTACAGATGGTGA
TCTACGGCGCACTCTCAAGGCTAGTGGGGAAGGCATCTTTAAGCTTACAGTAGGAGAAATGTGCAACAGGAACCCAAGAACAATTGGTCCAGATGCAATG
GCGGTGGAAGCCATGAAGAAGATGGAATCACCACCATCCCCTGTACAATTTCTGCCTGTTATCAAGGATGATAATATCTTGATCGGCATTGTTACCCTGC
ACGGATTAGTTTCAGCTGGCCTTTGA
AA sequence
>Potri.005G225700.1 pacid=42803350 polypeptide=Potri.005G225700.1.p locus=Potri.005G225700 ID=Potri.005G225700.1.v4.1 annot-version=v4.1
MGSLPPFLDLPSPDAKFQQIDQTTLLNLFKSQQNHLNYFFQNLNLSQALTFTQTLLNCNGTIFFSGVGKSGFVANKISQTLISLGIRAGFLSPVDALHGD
IGALSSSDILVLFSKSGNTEELLRLVPCAKAKGAYLVSVTSVEGNALTAVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLSKEEYA
ANHPAGRIGKSLIFKVKDVMKKQNELPICKEGDLIMDQLVELTSKGCGCLLVIDEDSHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRNPRTIGPDAM
AVEAMKKMESPPSPVQFLPVIKDDNILIGIVTLHGLVSAGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54690 SETH3 Sugar isomerase (SIS) family p... Potri.005G225700
[exp]
0 1
AT3G56110 PRA1.B1 prenylated RAB acceptor 1.B1 (... Potri.010G183300
[exp]
1.41 0.8020
AT3G05020 ACP1 acyl carrier protein 1 (.1) Potri.013G031300
[exp]
3.60 0.8164
AT1G24360 NAD(P)-binding Rossmann-fold s... Potri.008G178700
[exp]
6.48 0.7729
AT3G24480 Leucine-rich repeat (LRR) fami... Potri.006G158814
[exp]
16.43 0.7956
AT2G05990 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDU... Potri.001G013500
[exp]
16.73 0.8011 Pt-MOD1.1
AT4G37450 ATAGP18, AGP18 arabinogalactan protein 18 (.... Potri.005G144900
[exp]
18.57 0.8014
AT5G10110 unknown protein Potri.005G077400
[exp]
21.79 0.7984
AT2G38040 CAC3 acetyl Co-enzyme a carboxylase... Potri.006G095800
[exp]
23.66 0.7146 CAC3.1
Potri.004G101600
[exp]
30.00 0.7906
AT3G08030 Protein of unknown function, D... Potri.001G263900
[exp]
33.13 0.7761

Potri.005G225700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.