Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28530 271 / 6e-90 NAC ANAC074 NAC domain containing protein 74 (.1.2) AT1G56010 202 / 3e-63 NAC NAC1, ANAC021, ANAC022 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) AT1G76420 201 / 5e-63 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G24430 201 / 7e-63 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT3G12977 197 / 3e-62 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G53950 192 / 7e-59 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G07680 189 / 2e-58 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G61430 189 / 6e-58 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT3G18400 188 / 6e-58 NAC ANAC058 NAC domain containing protein 58 (.1) AT3G15170 183 / 3e-56 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G037100 [exp] 470 / 1e-169 AT4G28530 276 / 6e-92 NAC domain containing protein 74 (.1.2) Potri.007G065400 [exp] 209 / 1e-66 AT1G56010 337 / 4e-116 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Potri.005G098200 [exp] 204 / 2e-64 AT1G56010 332 / 6e-114 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Potri.002G005800 [exp] 201 / 4e-62 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G255900 [exp] 200 / 6e-62 AT1G76420 295 / 4e-98 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.006G277000 [exp] 194 / 4e-60 AT2G24430 340 / 1e-116 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.018G003800 [exp] 194 / 9e-60 AT2G24430 350 / 1e-120 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G046800 [exp] 190 / 1e-58 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.012G001400 [exp] 190 / 2e-58 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022915 [exp] 355 / 1e-123 AT4G28530 274 / 7e-91 NAC domain containing protein 74 (.1.2) Lus10033905 [exp] 326 / 5e-112 AT4G28530 271 / 2e-89 NAC domain containing protein 74 (.1.2) Lus10024908 [exp] 247 / 1e-81 AT4G28530 200 / 2e-62 NAC domain containing protein 74 (.1.2) Lus10042466 [exp] 209 / 2e-65 AT1G56010 273 / 9e-90 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Lus10003548 [exp] 207 / 7e-61 AT1G08620 455 / 4e-142 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10005537 [exp] 192 / 1e-59 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10009029 [exp] 189 / 7e-58 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10009669 [exp] 189 / 8e-58 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1) Lus10041924 [exp] 181 / 1e-56 AT5G53950 281 / 9e-95 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10020165 [exp] 185 / 7e-56 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.005G225800.1 pacid=42803432 polypeptide=Potri.005G225800.1.p locus=Potri.005G225800 ID=Potri.005G225800.1.v4.1 annot-version=v4.1 ATGGGGCTAAGAGACATTGGAGCAACACTCCCTCCTGGTTTTAGGTTCTATCCTAGTGATGAAGAGCTCGTTTGCCATTACCTCTACAAAAAGATCACAA ATGAACAAGTCTTGAAGGGTACTTTGGTGGAAGTTGACTTGCATACTTGTGAGCCATGGCAACTTCCTGAGGTGGCTAAGCTCAACGCAACTGAGTGGTA TTTCTTCAGTTTCCGGGATCGAAAGTACGCCACCGGATTCAGAACCAATCGTGCTACAACAACTGGATACTGGAAGGCTACAGGGAAGGATCGTACCGTT TTGGACCCTACTACTCGTGAAGTTGTAGGGATGAGAAAGACATTGGTTTTCTATAGGAACAGAGCTCCCAATGGAATCAAAACTGGTTGGATCATGCATG AGTTTCGTCTTGAGACCCCACATATGCACCCTAAGGAGGACTGGGTGTTGTGCAGAGTATTCCACAAATGCAAAGCAGAAGATTACAACGCAAAATTCAG CCCACAGCTCATGTTCGAGACCACAACTAGTAGTGGCACTGTAAACTTAGCAGCATCACCTTTAAGTACTGATCATCAAACTTTGCCTTGTGGGTACCAG CAAATGACATCATTATCATCAAACCCACCCCATCAAAACCAAGACCAAAGCTCTTTGCTAAACCTTCTTCAGCTATCTCAGGACAGGAACGCCAACCCCA ATATTAGCACCGACATCAGCTCCAAAGCGGTTGATGATTATGCCTTCTTGTGGGATGACATGAACTTGGAAGAAACTAGCTTGGGAGATGGGGTGCTGGC TTCAAACCTGGAAGACATGAGATTTGAGATTGATCATAACAGCATGGTCTTCATATGA
AA sequence Show only first row Show all	>Potri.005G225800.1 pacid=42803432 polypeptide=Potri.005G225800.1.p locus=Potri.005G225800 ID=Potri.005G225800.1.v4.1 annot-version=v4.1 MGLRDIGATLPPGFRFYPSDEELVCHYLYKKITNEQVLKGTLVEVDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTTGYWKATGKDRTV LDPTTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMHPKEDWVLCRVFHKCKAEDYNAKFSPQLMFETTTSSGTVNLAASPLSTDHQTLPCGYQ QMTSLSSNPPHQNQDQSSLLNLLQLSQDRNANPNISTDISSKAVDDYAFLWDDMNLEETSLGDGVLASNLEDMRFEIDHNSMVFI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Potri.005G225800 [exp]	0	1
AT2G44260			Plant protein of unknown funct...		Potri.009G025102 [exp]	4.00	0.8499
AT4G04220		AtRLP46	receptor like protein 46 (.1)		Potri.001G003200 [exp]	4.89	0.8208
AT2G27480			Calcium-binding EF-hand family...		Potri.004G202200 [exp]	5.00	0.8331
AT1G76740			unknown protein		Potri.005G194350 [exp]	5.19	0.7670
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	6.48	0.8350	PtrMTP2,Pt-MTP1.2
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	6.63	0.8344
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	12.12	0.8162
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G038100 [exp]	14.96	0.8005
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Potri.015G127900 [exp]	16.70	0.7995
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.016G088000 [exp]	18.43	0.7756

Compare expression of checked genes

Potri.005G225800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.