Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04430 939 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 934 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 927 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G14430 733 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G06050 469 / 7e-158 Putative methyltransferase family protein (.1) AT2G39750 466 / 1e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 463 / 4e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04060 441 / 3e-148 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G10200 440 / 6e-148 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 435 / 6e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036800 [exp] 1123 / 0 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G342300 [exp] 738 / 0 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G036732 [exp] 568 / 0 AT1G04430 522 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G036666 [exp] 484 / 4e-170 AT4G14360 437 / 1e-151 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 466 / 4e-157 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 464 / 3e-156 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G043600 [exp] 447 / 1e-150 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 439 / 6e-147 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 439 / 1e-146 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011815 [exp] 992 / 0 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021177 [exp] 904 / 0 AT1G04430 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10003656 [exp] 748 / 0 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022291 [exp] 748 / 0 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10040268 [exp] 463 / 2e-156 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 463 / 8e-156 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 460 / 8e-155 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038973 [exp] 458 / 9e-155 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 457 / 9e-155 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 458 / 9e-154 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G226000.4 pacid=42802440 polypeptide=Potri.005G226000.4.p locus=Potri.005G226000 ID=Potri.005G226000.4.v4.1 annot-version=v4.1 ATGTCAAGGGGAAAAGGTGATGGGGATCAAAAGAAGCGGCTGGTAACTTGGATAGTGGTATTGGGTATCATTTGTGGTTGTGTTTACTTGTTTTCTCGGA ACAGTGGAACATCTGCTCTGGAATATGGAAGTAAATCTCTAAGGAAGTTGGGTTCTTCTTATTTGGGTGGAGATGATGATGGTGATGAAGCTTCCAGCAA ATCCGGTGAAGAAGTGCAGGGTGATGTTATACTTAAAAGCATTCCGGTTTGTGATGATCGCCACTCGGAGCTGATTCCTTGTCTAGACAGAAATCTTATA TACCAGACAAGATTGAAGCTGGATTTGTCTTTGATGGAGCACTATGAAAGACACTGCCCAGTACCAGAAAGACGCTTCAATTGCTTGATCCCTCCTCCAC CAGGGTACAAGGTCCCAATCAAGTGGCCCAAAAGCAGAGATGAGGTCTGGAAAGTAAATATACCTCACACCCACCTGGCAAGTGAAAAATCTGATCAGAA CTGGATGGTTGTCAAAGGTAACAAAATTTCATTCCCTGGAGGAGGAACACACTTCCATTACGGAGCTGATAAGTATATAGCCTCAATTGCAAATATGCTA AACTTTTCAAATAACATTTTAAACAATGAAGGAAGGCTCCGGACAGTCCTTGATGTTGGTTGTGGAGTTGCAAGTTTTGGGGGATATCTGCTCTCTTCTG ATATTATTTCAATGTCATTGGCACCAAACGATGTTCATCAAAACCAGATCCAGTTTGCCTTGGAGAGAGGAATTCCTGCATATCTTGGTGTTTTAGGGAC TAAGAGACTTCCATACCCAAGTAGATCTTTTGAATTTGCACATTGTTCTCGCTGTAGGATTGATTGGCTTCAAAGGGACGGAATCCTTCTGCTCGAGCTA GATAGGTTGCTGAGACCAGGAGGCTATTTTGCCTACTCATCTCCTGAGGCCTATGCACAAGATGAAGAGGATCTGAGGATCTGGAGAGAAATGAGTGCCC TTGTGGAAAGAATGTGCTGGAAGATAGCTGCGAAAAGGAATCAAACTGTTATCTGGGTCAAGCCTCTAACAAACGACTGTTACAAGGAAAGAGAACCTGG TACTCAACCTCCTCTCTGCAAATCTGATGATGATCCAGATGCAGTGTGGGGTGTGCCAATGAAAGCTTGCATCACTCCTTACTCTGATCAACAACATAAA GCAAAAGGGACTGGATTGGCTCCGTGGCCTGCTCGGTTGACTACACCACCTCCTCGTCTTGCTGACTTTGGCTATTCTGCTGAAATGTTTGAAAAGGACA CGGAAGTTTGGCAGCACAGGGTTGAGAATTACTGGAATCTTTTGAGCCCAAAGATTCAGCCTGATACACTGAGAAATTTGATGGACATGAAGGCAAACCT AGGGTCATTTGCAGCTGCCCTGAAGAGCAAAGACGTATGGGTTATGAATGTTGTGCCTGAAGATGGACCCAACACTCTCAAGATAATATATGATAGAGGC CTGATGGGCTCTGTGCACAGCTGGTGTGAATCCTACTCGATCTACCCACGAACTTATGATTTACTGCATGCCTGGACTGTCTTCTCCGACATCACTAAGA AAGATTGCAGTGCTGTGGATCTGTTAATTGAGATGGACCGCATCTTGAGACCCACAGGCTTCATTATTATCCGTGACAGTCCATCAGTAGTGGAATTCGT AAAGAAACATATGTCAGCACTGCATTGGGAGGCAGTGGCTACAGGTGATGCTGAGGAAAACGAGCAAGGTGAGGATGAGGTGGTGTTCATCGTCCAAAAG AAGATGTGGCTAACAAGCAAAAGTTTCAGTGTCACTGAATAA
AA sequence Show only first row Show all	>Potri.005G226000.4 pacid=42802440 polypeptide=Potri.005G226000.4.p locus=Potri.005G226000 ID=Potri.005G226000.4.v4.1 annot-version=v4.1 MSRGKGDGDQKKRLVTWIVVLGIICGCVYLFSRNSGTSALEYGSKSLRKLGSSYLGGDDDGDEASSKSGEEVQGDVILKSIPVCDDRHSELIPCLDRNLI YQTRLKLDLSLMEHYERHCPVPERRFNCLIPPPPGYKVPIKWPKSRDEVWKVNIPHTHLASEKSDQNWMVVKGNKISFPGGGTHFHYGADKYIASIANML NFSNNILNNEGRLRTVLDVGCGVASFGGYLLSSDIISMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGILLLEL DRLLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVERMCWKIAAKRNQTVIWVKPLTNDCYKEREPGTQPPLCKSDDDPDAVWGVPMKACITPYSDQQHK AKGTGLAPWPARLTTPPPRLADFGYSAEMFEKDTEVWQHRVENYWNLLSPKIQPDTLRNLMDMKANLGSFAAALKSKDVWVMNVVPEDGPNTLKIIYDRG LMGSVHSWCESYSIYPRTYDLLHAWTVFSDITKKDCSAVDLLIEMDRILRPTGFIIIRDSPSVVEFVKKHMSALHWEAVATGDAEENEQGEDEVVFIVQK KMWLTSKSFSVTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.005G226000 [exp]	0	1
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Potri.014G129200 [exp]	11.57	0.7161	UXS2.2
AT4G27720			Major facilitator superfamily ...		Potri.012G020500 [exp]	12.72	0.7788
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.001G004600 [exp]	16.00	0.7982
AT4G22320			unknown protein		Potri.011G023200 [exp]	38.67	0.7818
AT4G09810			Nucleotide-sugar transporter f...		Potri.002G064700 [exp]	62.25	0.7505
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Potri.008G139900 [exp]	65.66	0.7576
AT1G72480			Lung seven transmembrane recep...		Potri.003G068500 [exp]	69.13	0.7581
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Potri.009G165300 [exp]	87.06	0.7428	SLY1.2
AT2G19160			Core-2/I-branching beta-1,6-N-...		Potri.006G076600 [exp]	100.15	0.7381
AT3G54250			GHMP kinase family protein (.1...		Potri.008G021100 [exp]	132.23	0.6898	MVD1.1

Compare expression of checked genes

Potri.005G226000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.